Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4218g00003 ATGTCACCCGATGACACACCACCTGCGAAGCCCGAAACAACAACAACAAAAGACCACGAGAACCAAGTTTCCGGTGGCCGGAAAACCGCCTCCACAAGGCCTCAAGAGCAAGGTATGAAGTGCCCGCGATGTGACTCACCCAACACAAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCAAGGCATTTCTGCAAAACGTGTAGAAGATACTGGACAAAAGGTGGAGCTTTGCGTAACGTTCCAATAGGTGGTGGTTGCAGGAAGAACAAGAAGGTGAAATCATCGAGGCTCTCATGTGACTCCAAGGACTCTGCTTCCTCTTCAGAGCTTGGTAGCCTCAAGTTCCTTCATGGTCTTTCACCTTCTGTGGACTTTCAGCTTGGTGCGTTACCGTTACCGTTACCGTTACAGTTCCCTAGGTTGCATCATCACCCTCCTAACACTTCCATCTATAACCAGTTCTCTTCTTTTGGAGACACTACTTCTGCTTCTGTCACAAGTGCTTCCTGTTTCAACCTTGACCCTTCTTCTGGTACCTCAAATTCTTTGCTTGGTCTGAATTACCCGTTTTCTTCAACTGGAAGCGATTATAACGGTGCAATCCAGGGAATGAACTCCATGAACATTCACAGTAGCATCGCTTCTTCAATTGAGTCTTTGAGTTCTATAAACCAGGATTTACACTGGAAGCTACAGCAACAGCGATTAGCGACGCTTTTTGGTGGAGATAACCAGAAAGATAGTAGCGTTTCACAGGATAACCCTGAGAATCATCAGACCCAGAAACCGCAACCCATTTTGTTTCAGAGCCTTGAGCTTTCAAAGCCAGGGATTTTCCCAGTTGATAATTCAAGAAAAGAAGGTTCAGGCGGGGATGCACATACACACACTGAATGGTTCTTTGGGAACTCTTATGCATCGGTGACTCCTACACCAACTACAAGTAGTGGTGGTCCTGGCCATGATAATGGAACCAACAACTGGAATAGTGGTGTCAATGCTTGGAGTGATGTTCAGCCGCAGCAGCAGCAATACAGTGTTTTGCCCTAG 1056 0.4669 MSPDDTPPAKPETTTTKDHENQVSGGRKTASTRPQEQGMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSASSSELGSLKFLHGLSPSVDFQLGALPLPLPLQFPRLHHHPPNTSIYNQFSSFGDTTSASVTSASCFNLDPSSGTSNSLLGLNYPFSSTGSDYNGAIQGMNSMNIHSSIASSIESLSSINQDLHWKLQQQRLATLFGGDNQKDSSVSQDNPENHQTQKPQPILFQSLELSKPGIFPVDNSRKEGSGGDAHTHTEWFFGNSYASVTPTPTTSSGGPGHDNGTNNWNSGVNAWSDVQPQQQQYSVLP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4218g00003 351 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gabi4218g00003 351 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 239 IPR045174 GO:0003700|GO:0006355
Gabi4218g00003 351 MobiDBLite consensus disorder prediction 312 351 - -
Gabi4218g00003 351 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gabi4218g00003 351 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gabi4218g00003 351 MobiDBLite consensus disorder prediction 244 268 - -
Gabi4218g00003 351 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4218g00003 Gabi-Chr4218 32230 33633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4218g00003 11 351 C2C2-Dof Transcription Factor Family AT5G65590 38.764 3.92e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4218g00003 zf-Dof 1.9e-32 No_clan