Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4218g00002 ATGGCAAACATTTTCTCAGGAGAAGAAAAGTTCAAAGTACCTGCCTATGGGTGGGCCGCTAGAGACTCCTCAGGAATTGTATCTCCCTTCCACTTCCGCAGAAGAATAAATGGTGATAATGATATCACCTTGAAGATACTCTATTGTGGGATTTGTCATGCCGACGTTCATTATCTCAAGAATGACACGGGAGGGAGTGTCTATCCACTGGTACCCGGGCACGAGATTGTGGGAGAAGTGACAAGAGTCGGTAGCAAAGTCACAAAATTCAAAATTGGTGATATAGCTGGTATCGGTCCCTATATAAGTTCGTGTCGCTCGTGTTCTTACTGTACTCAGGGCATTGAAGTTTGTTGCCCGAAACTGATATTGACCTACAATGGACATGAACAAGATGGATCAGTAACCTATGGTGGATACTCGGATATCATAGTGGTTGATGAGCATTTTGCAATCATAATGCCAAAAGGGTTGCCATTAGAAGGTGCAACTCCATTGCTGTGTGCTGGAGTCACAGTGTACAGCCCTTTGATACGCCATGAACTGTGTCAACCTGGCCAGCATTTGGGTGTGGTAGGCCTAGGTGGTCTTGGTCATGTGGCTGTTAAGTTTGCTAAGGCTTTCAATATGAAAGTCACTGTGATAAGTACTTCTCCTGGAAAGAAAAATGAAGCATTGGAAAGTCTTGGTGCGGACTCATTCTTGCTCAGTACTGACAAACAACAATTGCAGGAAGCCATGGACACAATGGATGGCATCATTGACACAGTTGCAGGCCATCACTCACTACCCCCATTAGTTGATTTATTGAAAACAGGTGGAAAATTGATTTTAGTGGGTGCGTCAATGACTCCTCTTGAGTTACCAACTGTGCCTCTCTTGTTGGGGAGGAAGATGATAGTTGGGAGTGCAGCCGGAGCGGTGAAAGAGAGCCAAGAAATGATTGATTTTGCCGCTAAGCACAACATCACTGCAGATATTGAGCTTGTTCCCATGGATTACGTCAACACTGCTTTGAAGCGACTCGCAAACAATGATGTTAGATACCGTTTTGTCATTGACGTGGCCAACACACTTGGCATCCCTCCTGTTAATTAG 1098 0.4481 MANIFSGEEKFKVPAYGWAARDSSGIVSPFHFRRRINGDNDITLKILYCGICHADVHYLKNDTGGSVYPLVPGHEIVGEVTRVGSKVTKFKIGDIAGIGPYISSCRSCSYCTQGIEVCCPKLILTYNGHEQDGSVTYGGYSDIIVVDEHFAIIMPKGLPLEGATPLLCAGVTVYSPLIRHELCQPGQHLGVVGLGGLGHVAVKFAKAFNMKVTVISTSPGKKNEALESLGADSFLLSTDKQQLQEAMDTMDGIIDTVAGHHSLPPLVDLLKTGGKLILVGASMTPLELPTVPLLLGRKMIVGSAAGAVKESQEMIDFAAKHNITADIELVPMDYVNTALKRLANNDVRYRFVIDVANTLGIPPVN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4218g00002 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
Gabi4218g00002 365 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Gabi4218g00002 365 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Gabi4218g00002 365 SUPERFAMILY GroES-like 26 187 IPR011032 -
Gabi4218g00002 365 Gene3D - 18 355 - -
Gabi4218g00002 365 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Gabi4218g00002 365 PANTHER ALDEHYDE REDUCTASE 12 358 IPR047109 GO:0016616
Gabi4218g00002 365 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Gabi4218g00002 365 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Gabi4218g00002 365 Gene3D - 169 325 - -
Gabi4218g00002 365 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Gabi4218g00002 365 CDD CAD1 17 354 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4218g00002 Gabi-Chr4218 19835 22613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4218g00002 15 363 Monolignol Biosynthesis Gene Families AT4G37990 61.891 1.63e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4218g00002 K23232 - gmx:100801089 500.36