Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00078 ATGGCTATCCGGGTTACCTTTTCCTTCTCCGGTTACGTTGCCCAAAACCTCGTCTCCTCCGCCGGCGCTCGTGTTGGAAATTCTCGTTGTGTCCAAGAATGCTGGATACGCTCTCGCCTTTTCGGAACTAACCAGAAGCCCGATCTCGATCCTTCCGGCGGCGTCCGCAATTTCCATTCCAGATCCAATTGTTGGGTCAAGAAATCTGCCTGTGCCTACACCACACTCGCCGGTGAGGTTCTTGGTGACAACTGTAAGAACCCCATCATCTTAGGTTTGATTTCGATGATGAAGTCAACGGCTGGTGTTTCTGGATCATCCACGGCGGCTATGGGTATTTTGGGTATTTCACCCTTTAAGACCTCTTCGATTATTCCCTTTTTGCAGGGTTCCAAGTGGCTTCCTTGCAACGAGTCGCTTCCTGACCCCACGTCTTGGGAAGTGGATAAAGGTGGAACGCGGTGTATTGACGGTGGTGCGAATGCCGATTCTGTTTTCAACCCTAAGGATCTCGACAAAAGTAGTTGGCTTTCGCGGTTGTTGGGTGTTTGTTCGGAGGATGCGAAGGCTGCGTTCACTGCTGTCACTGTTAGTTTGCTCTTCAAATCGTTCTTGGCTGAACCTAGATCCATTCCCTCTTCTTCTATGGCCCCAACTCTTGAAGTGGGTGACCGTATTCTAGCTGAGAAGTTTTCTTTCTTTTTTAGAAAGCCTGATGTTTCGGATATAGTGATTTTTAAGGCGCCTCCTATTACATTAAATATTAAGGAATTTGGTTTTAGTTCATCTGATGTATTTATAAAAAGGATTGTGGCTAAGGCTGGGGACTCTGTTGAGGTTCGTGGTGGGAAACTACTGGTGAATGGTGTTGCTGAAGATGAGGAATTTGTTTTAGAGCCTCTTGCTTATAAGATGGATCCAGTGGTTGTACCGGAAGGGTATGTCTTTGTGTTGGGAGACAATCGTAATAGAAGCTTTGATTCTCATAATTGGGGTCCACTTCCTGTCGAGAACATCATCGGTAAATCCATGTTTCGATACTGGCCTCCATCTAAAGTATCTGATACTGACTCCCTTCATAAACTCACACCTGGAAACAATCCTGTGGCAATTTCTTGA 1119 0.4629 MAIRVTFSFSGYVAQNLVSSAGARVGNSRCVQECWIRSRLFGTNQKPDLDPSGGVRNFHSRSNCWVKKSACAYTTLAGEVLGDNCKNPIILGLISMMKSTAGVSGSSTAAMGILGISPFKTSSIIPFLQGSKWLPCNESLPDPTSWEVDKGGTRCIDGGANADSVFNPKDLDKSSWLSRLLGVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMAPTLEVGDRILAEKFSFFFRKPDVSDIVIFKAPPITLNIKEFGFSSSDVFIKRIVAKAGDSVEVRGGKLLVNGVAEDEEFVLEPLAYKMDPVVVPEGYVFVLGDNRNRSFDSHNWGPLPVENIIGKSMFRYWPPSKVSDTDSLHKLTPGNNPVAIS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00078 372 Gene3D Umud Fragment, subunit A 201 361 - -
Gabi4217g00078 372 PANTHER SIGNAL PEPTIDASE I 128 355 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi4217g00078 372 CDD S26_SPase_I 207 342 IPR019533 GO:0004252|GO:0006465
Gabi4217g00078 372 PRINTS Bacterial leader peptidase 1 (S26A) family signature 266 278 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi4217g00078 372 PRINTS Bacterial leader peptidase 1 (S26A) family signature 204 220 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi4217g00078 372 PRINTS Bacterial leader peptidase 1 (S26A) family signature 310 329 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi4217g00078 372 NCBIfam signal peptidase I 191 349 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gabi4217g00078 372 SUPERFAMILY LexA/Signal peptidase 203 353 IPR036286 -
Gabi4217g00078 372 Pfam Signal peptidase, peptidase S26 188 348 IPR019533 GO:0004252|GO:0006465
Gabi4217g00078 372 ProSitePatterns Signal peptidases I signature 3. 315 328 IPR019758 GO:0004252|GO:0016020
Gabi4217g00078 372 MobiDBLite consensus disorder prediction 356 372 - -
Gabi4217g00078 372 FunFam Peptidase/ serine-type peptidase 213 347 - -
Gabi4217g00078 372 MobiDBLite consensus disorder prediction 353 372 - -
Gabi4217g00078 372 ProSitePatterns Signal peptidases I serine active site. 213 220 IPR019756 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00078 Gabi-Chr4217 710449 713236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00078 216 349 MADS-box Gene Family AT1G29960 31.111 1.40e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00078 K03100 - gmx:100817525 556.984