Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00065 ATGCAATCATCGAACGGCTCTGATTCGCAACCAACGGAGCAGAATCAGCAACGGCAACAGCAAACGCCACCGCAGCCAGTGGCACTGCCGCAGCAGTGGATGCCGATGCAATACCCAGCGGCGGCCATGGTAATGCAGCATCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCACCGCAGCCCTACCTGCCTTACCACCAATACCAGCAGCAGGTGCCGCACGTGCCTCATCAGCATCAGGGATCCAGCGCCGAGAACAAGACGATTTGGGTCGGCGATTTGCATCATTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGGACAGCTGAGAAAGTCTTACAGAATTTTGCTGGAATTGTGATGCCTAACACGGAGCAACCTTTCCGCCTGAACTGGGCTACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGCATGTTGCATGAAACTTTTTCTAGTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTGTACTGCTCTAGCAGGCCCATGCGTATCGGTGCTGCAACTCCTAGGAAATCGTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTTCAGCTGAAGATCTTAGGCAGCCATTTTCCCAGTATGGTGAGATAGTGTCTGTTAAGATACCAGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGTTAAATGGTACAATGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGTCGCAATCCAGCAAATAAGCAGCTTAGAATGGACTTCGGCAATCCTTGGAGTGGAGCGTATTATGGTGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCTTCTCATGACCCGAGCATATATGCTGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGCCACCAACAACAAGTAAGCTGA 1254 0.4729 MQSSNGSDSQPTEQNQQRQQQTPPQPVALPQQWMPMQYPAAAMVMQHHMLPPQHYAPPPPQPYLPYHQYQQQVPHVPHQHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNFAGIVMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQLRMDFGNPWSGAYYGGPVYDGYGYALPPSHDPSIYAAAAYGAYPVYGGHQQQVS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00065 417 CDD RRM3_NGR1_NAM8_like 285 356 - -
Gabi4217g00065 417 SUPERFAMILY RNA-binding domain, RBD 49 169 IPR035979 GO:0003676
Gabi4217g00065 417 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4217g00065 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 358 IPR000504 GO:0003723
Gabi4217g00065 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Gabi4217g00065 417 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4217g00065 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Gabi4217g00065 417 MobiDBLite consensus disorder prediction 257 288 - -
Gabi4217g00065 417 SMART rrm1_1 89 164 IPR000504 GO:0003723
Gabi4217g00065 417 SMART rrm1_1 287 354 IPR000504 GO:0003723
Gabi4217g00065 417 SMART rrm1_1 182 256 IPR000504 GO:0003723
Gabi4217g00065 417 CDD RRM2_SECp43_like 180 259 - -
Gabi4217g00065 417 CDD RRM1_SECp43_like 89 169 - -
Gabi4217g00065 417 SUPERFAMILY RNA-binding domain, RBD 180 359 IPR035979 GO:0003676
Gabi4217g00065 417 FunFam Polyadenylate-binding protein RBP47 271 388 - -
Gabi4217g00065 417 FunFam Polyadenylate-binding protein RBP47C isoform A 180 256 - -
Gabi4217g00065 417 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Gabi4217g00065 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 351 IPR000504 GO:0003723
Gabi4217g00065 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Gabi4217g00065 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Gabi4217g00065 417 Gene3D - 87 167 IPR012677 -
Gabi4217g00065 417 MobiDBLite consensus disorder prediction 261 288 - -
Gabi4217g00065 417 Gene3D - 168 273 IPR012677 -
Gabi4217g00065 417 Gene3D - 274 388 IPR012677 -
Gabi4217g00065 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00065 Gabi-Chr4217 549912 555936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00065 90 366 Eukaryotic Initiation Factors Gene Family AT4G34110 27.660 3.80e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00065 - - gmx:100785454 687.182