Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00064 ATGCAATCATCGAACGGCTCTGATTCGCAACCAACGGAGCAGAATCAGCAACGGCAACAGCAAACGCCACCGCAGCCAGTGGCACTGCCGCAGCAGTGGATGCCGATGCAATACCCAGCGGCGGCCATGGTAATGCAGCATCACATGTTGCCGCCTCAACATTACGCGCCGCCGCCACCGCAGCCCTACCTGCCTTACCACCAATACCAGCAGCAGGTGCCGCACGTGCCTCATCAGCATCAGGGATCCAGCGCCGAGAACAAGACGATTTGGGTCGGCGATTTGCATCATTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGGACAGCTGAGAAAGTCTTACAGAATTTTGCTGGAATTGTGATGCCTAACACGGAGCAACCTTTCCGCCTGAACTGGGCTACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGCATGTTGCATGAAACTTTTTCTAGTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTGTACTGCTCTAGCAGGCCCATGCGTATCGGTGCTGCAACTCCTAGGAAATCGTCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTTCAGCTGAAGATCTTAGGCAGCCATTTTCCCAGTATGGTGAGATAGTGTCTGTTAAGATACCAGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGTTAAATGGTACAATGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGTCGCAATCCAGCAAATAAGCAGCAGCTTAGAATGGACTTCGGCAATCCTTGGAGTGGAGCGTATTATGGTGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCTTCTCATGACCCGAGCATATATGCTGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGCCACCAACAACAAGTAAGCTGA 1257 0.4733 MQSSNGSDSQPTEQNQQRQQQTPPQPVALPQQWMPMQYPAAAMVMQHHMLPPQHYAPPPPQPYLPYHQYQQQVPHVPHQHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNFAGIVMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQQLRMDFGNPWSGAYYGGPVYDGYGYALPPSHDPSIYAAAAYGAYPVYGGHQQQVS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00064 418 CDD RRM3_NGR1_NAM8_like 285 356 - -
Gabi4217g00064 418 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4217g00064 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Gabi4217g00064 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 358 IPR000504 GO:0003723
Gabi4217g00064 418 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4217g00064 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Gabi4217g00064 418 MobiDBLite consensus disorder prediction 257 288 - -
Gabi4217g00064 418 SMART rrm1_1 89 164 IPR000504 GO:0003723
Gabi4217g00064 418 SMART rrm1_1 287 354 IPR000504 GO:0003723
Gabi4217g00064 418 SMART rrm1_1 182 256 IPR000504 GO:0003723
Gabi4217g00064 418 CDD RRM2_SECp43_like 180 259 - -
Gabi4217g00064 418 CDD RRM1_SECp43_like 89 169 - -
Gabi4217g00064 418 SUPERFAMILY RNA-binding domain, RBD 180 361 IPR035979 GO:0003676
Gabi4217g00064 418 FunFam Polyadenylate-binding protein RBP47C isoform A 180 256 - -
Gabi4217g00064 418 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Gabi4217g00064 418 Gene3D - 87 167 IPR012677 -
Gabi4217g00064 418 MobiDBLite consensus disorder prediction 261 288 - -
Gabi4217g00064 418 FunFam Polyadenylate-binding protein RBP47 271 389 - -
Gabi4217g00064 418 Gene3D - 275 389 IPR012677 -
Gabi4217g00064 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 351 IPR000504 GO:0003723
Gabi4217g00064 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Gabi4217g00064 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Gabi4217g00064 418 SUPERFAMILY RNA-binding domain, RBD 49 170 IPR035979 GO:0003676
Gabi4217g00064 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 362 - -
Gabi4217g00064 418 Gene3D - 169 274 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00064 Gabi-Chr4217 549912 555936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00064 89 385 Eukaryotic Initiation Factors Gene Family AT2G23350 26.885 4.41e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00064 - - gmx:100785454 682.559