Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00052 ATGGTAGCGTCATATGAGGAATCTCGCCGCAAAAGAATGGAGGAAAACAGGAAGAGAATGGAGGCTCTGAATCTGACTCAGCTTTCTCAAGCACTTCATAAGTCTCCTTCTTCATCTCCCTCTCCCTCTCCGCTTAAGCACGTCAAATCTCGCACCATCCAGAAACAGCTTGTTGTCGTGAGGAGGTCAAGCCGCGTCGCCAACATTCCCGCTCCTGTTTACAAAGAAGTCGTTATTGAACGCGTCGCAATACCTAGAAGAAGGCATAGAGATTTTTCGAATCGGGTATATGCTTCAATGGAAGAAAGAGAGGAAGCCTTGGAGAAAGCTGATAAGTTAATGTCGGATTTAGAATCTAAGTATCCAACTTTTATAAAGTCAATGCTCCCGTCCCACGTCAGTGGGGGATTCTGGCTGGGCCTTCCAGTTCAGTTCTGCAACAAAAACCTTCCAAAACGAGATGAAATGATTACTTTGATTGATGAGGATGGGAATGAGTATCCGACAATATATTTGTCTAAAAAAGTAGGACTTAGTGGTGGATGGAGAGGTTTTGCGATTGCTCATAACCTAGCTGACGGGGATGCTTTAATTTTTCAATTAATTAAGAGCACTACATTCAAGGTATACATTGTTAGAGTGAATAATCCTCCAGAGGGTAATCAGCTTAAGTGA 675 0.4311 MVASYEESRRKRMEENRKRMEALNLTQLSQALHKSPSSSPSPSPLKHVKSRTIQKQLVVVRRSSRVANIPAPVYKEVVIERVAIPRRRHRDFSNRVYASMEEREEALEKADKLMSDLESKYPTFIKSMLPSHVSGGFWLGLPVQFCNKNLPKRDEMITLIDEDGNEYPTIYLSKKVGLSGGWRGFAIAHNLADGDALIFQLIKSTTFKVYIVRVNNPPEGNQLK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00052 224 SUPERFAMILY DNA-binding pseudobarrel domain 117 215 IPR015300 -
Gabi4217g00052 224 Gene3D - 98 216 IPR015300 -
Gabi4217g00052 224 CDD B3_DNA 122 213 IPR003340 GO:0003677
Gabi4217g00052 224 Coils Coil 100 120 - -
Gabi4217g00052 224 ProSiteProfiles B3 DNA-binding domain profile. 124 215 IPR003340 GO:0003677
Gabi4217g00052 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 217 IPR044837 -
Gabi4217g00052 224 Pfam B3 DNA binding domain 124 213 IPR003340 GO:0003677
Gabi4217g00052 224 MobiDBLite consensus disorder prediction 30 49 - -
Gabi4217g00052 224 SMART B3_2 124 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00052 Gabi-Chr4217 482034 484250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00052 4 223 B3 DNA Binding Superfamily AT3G19184 52.838 7.34e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4217g00052 B3 7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00052 - - gmx:100797091 322.783