Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00051 ATGGTGGCGTCATATGAGGAATCTCGACGCAAGAGATTGGAGGAAAACAGGAAGAGAATGGAGGCCCTGAATCTGCCGCAGCTTTCTCAAGCACTTCATAAGTCTCCTTCTCCGTCTCCCTCTCCGCTTAAGCACGTCAAATCTCGCACCATCCAGAAACAGCTTGTTGTCGTAAGGAGGTCAAGCCGTGTCGCCAACATGCCCGCTCCTGTTTACAAAGAAGTGCCTATTGAACGCGTCGCAATACCTAGAAGAGTTTATAATAGGCATAGAGATTATTCGAATCGGGTATATGCTTCACAGGAAGCCAGAGAGGAAGCCTTGGAGAAAGCTGATAAGTTAATGTCGGATTTAGAATCCAAGTATCCAACCTTTATAAAGACAATGCTCCAGTCCCACGTCAGTGGGGGATTCTGGCTGGGCCTTCCAGTCTGGTTCTGCAAGAAAAACCTTCCAAAACGGGATGAAGTGATTACTTTGATTGATGATGATGGTAATGAGTATCCTACAATATATTTGCCTCGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGCTCATAACCTAGCTGATGGAGATGCTTTAATTTTTCAATTAATTAAGCGCACTGCATTCAAGGTGTACATTGTTAGAGTGAATAGTCCTCCAGAGGGTAATCAGCTTCAGTGA 678 0.4484 MVASYEESRRKRLEENRKRMEALNLPQLSQALHKSPSPSPSPLKHVKSRTIQKQLVVVRRSSRVANMPAPVYKEVPIERVAIPRRVYNRHRDYSNRVYASQEAREEALEKADKLMSDLESKYPTFIKTMLQSHVSGGFWLGLPVWFCKKNLPKRDEVITLIDDDGNEYPTIYLPRKTGLSGGWKGFAVAHNLADGDALIFQLIKRTAFKVYIVRVNSPPEGNQLQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00051 225 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4217g00051 225 Coils Coil 101 121 - -
Gabi4217g00051 225 ProSiteProfiles B3 DNA-binding domain profile. 125 216 IPR003340 GO:0003677
Gabi4217g00051 225 MobiDBLite consensus disorder prediction 1 47 - -
Gabi4217g00051 225 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 48 217 IPR044837 -
Gabi4217g00051 225 Coils Coil 3 23 - -
Gabi4217g00051 225 Pfam B3 DNA binding domain 125 214 IPR003340 GO:0003677
Gabi4217g00051 225 CDD B3_DNA 123 214 IPR003340 GO:0003677
Gabi4217g00051 225 SMART B3_2 125 216 IPR003340 GO:0003677
Gabi4217g00051 225 MobiDBLite consensus disorder prediction 28 47 - -
Gabi4217g00051 225 SUPERFAMILY DNA-binding pseudobarrel domain 118 216 IPR015300 -
Gabi4217g00051 225 Gene3D - 99 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00051 Gabi-Chr4217 471070 473137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00051 49 223 B3 DNA Binding Superfamily AT5G42700 61.364 2.18e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4217g00051 B3 2.2e-14 CL0405