Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00026 ATGGACACTATTGACCAGTTAAAGTCGTCGTCCCCTTCATCGGAGGATCAGATGGACATGATGACTATGATGATGATGCACCTCCCTGAATATTCTGCATCTTACGGTGACGACGCCGTGGAGGGATTTCCACCGCCGGAGGAGTTACATGGCGCTTCTAACAACATACGCAGATCTATGCCACTAACAGATTTAATTGGTAACCCTCCTATGCCTTGGTCATCGACGTCATTCACACAGTTACCATCAACAACAATCTCTTTCGGTAATAACCCTACACCGATCCTTCAAGAACAAGAACAAACCTTTTTGTCAAACCCTCAAGCTACGTATACGGCTCCCTCAGAGAAGCGGAACTCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCGGCGATGCAACCAATACACATAGACCCTGAATCAGTGAAGCCACCAAAGAGAAGGAACGTGAAGATTTCAAAGGATCCTCAGAGTGTGGCTGCTCGGCACCGTAGAGAAAGGATAAGCGAGAGAATAAGGATACTGCAGAGATTGGTGCCAGGAGGAACTAAGATGGACACTGCTTCCATGTTAGATGAAGCCATTCACTATGTCAAGTTTCTCAAGACACAGGTTCAGTCACTTGAACGTGCTTCAGTTAACAATACTAGGCCAGGGATAGGGTTCCCTGTTGCAATGTCTAGTCGGAGTACTCCTGTCACTGTCACACCTCATCTTCCTCTTCCTAAACCTTACCAAGCTCGAAATGTTGAGTATTATGGAGACGCATGA 777 0.4685 MDTIDQLKSSSPSSEDQMDMMTMMMMHLPEYSASYGDDAVEGFPPPEELHGASNNIRRSMPLTDLIGNPPMPWSSTSFTQLPSTTISFGNNPTPILQEQEQTFLSNPQATYTAPSEKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASVNNTRPGIGFPVAMSSRSTPVTVTPHLPLPKPYQARNVEYYGDA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00026 258 SMART finulus 160 209 IPR011598 GO:0046983
Gabi4217g00026 258 Gene3D - 153 219 IPR036638 GO:0046983
Gabi4217g00026 258 FunFam BHLH transcription factor 157 220 - -
Gabi4217g00026 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 212 IPR036638 GO:0046983
Gabi4217g00026 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 57 231 IPR045843 GO:0003700|GO:0006355
Gabi4217g00026 258 Pfam Helix-loop-helix DNA-binding domain 163 203 IPR011598 GO:0046983
Gabi4217g00026 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00026 Gabi-Chr4217 305434 306210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00026 120 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 90.816 2.51e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4217g00026 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00026 - - vum:124831293 273.478