Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00025 ATGGCTCTTCTGCTAGACAACTGTGAAGGCATTTTACTCTCTTTAGAGTCGCATAAATCGGTGCCGGCACCGTTCCTCACGAAGACATACCAACTGGTAGATGATCCCAACACAGATCACATAGTATCTTGGGGCGAAGATGACAGCACCTTTGTTGTTTGGCGTCCTCCCGAGTTTGCTAGGGATCTTCTCCCTAATTACTTCAAGCACAACAATTTCTCAAGCTTCGTTCGCCAGCTCAACACTTATGGTTTTAGAAAGATTGTGCCAGAAAGATGGGAGTTTGCTAATGAATTCTTCAAGAAGGGAGAGAAACACTTGTTGTGCGAGATCCATAGAAGAAAAACGGCACATCCTCAACAAATAGGGATGAATCATCATCATCACCACCACCATTCTCCAATGGGAGTCAACGTTCCAAGTTTCTTTCCGTTCTCCAGTACTAGCAGCAGAGTCAGCATCTCTCCGCCCAATGACTCTGACGAACAAGCCAATTGGTGTGACTCTCCGCCACTCACTTCACCAATTAGAGGAGCCACTTCCGTCATGAACAACGGAGCCAACTACAACAGTTCCGTCACTGCGCTTTCTGAGGACAACGAAAGACTCAGGCGAAGCAACAACATGCTCATGTCCGAGCTTGCCCACATGAAGAAGCTATATAACGACATAATCTACTTCGTTCAGAACCACGTCAAGCCAGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTCTGCAATACGCCACAAGCGTCCACTGCAACTCCCATAAGTACTAGTAATGTTTCAACGATGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCTAATAACCCTAAGCAAGCCACTCAACCTCAACCTCAAACCCATGCTGTGAACTCTCCCACCAACACATCAAGGAGCTCTATAACGTTTGTTGAAGGACCAAGCAGTAACAGCAGCAAGACTAAGCTTTTTGGGGTCTCGCTACAGTCCAAGAAAAGGGTGCACCCTGAGTACGGATCTAATCCCACGAATTTGGAGATGAATAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGCTTGAATCTAATGCCTCCTTCCAGTTGTTAG 1104 0.4629 MALLLDNCEGILLSLESHKSVPAPFLTKTYQLVDDPNTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPERWEFANEFFKKGEKHLLCEIHRRKTAHPQQIGMNHHHHHHHSPMGVNVPSFFPFSSTSSRVSISPPNDSDEQANWCDSPPLTSPIRGATSVMNNGANYNSSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPQASTATPISTSNVSTMQRPMNQLLGYYSNNPKQATQPQPQTHAVNSPTNTSRSSITFVEGPSSNSSKTKLFGVSLQSKKRVHPEYGSNPTNLEMNKARLVLEKDDLGLNLMPPSSC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00025 367 FunFam Heat stress transcription factor B-4 17 115 - -
Gabi4217g00025 367 Gene3D - 17 116 IPR036388 -
Gabi4217g00025 367 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4217g00025 367 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4217g00025 367 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4217g00025 367 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gabi4217g00025 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 294 IPR027725 -
Gabi4217g00025 367 MobiDBLite consensus disorder prediction 278 319 - -
Gabi4217g00025 367 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4217g00025 367 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4217g00025 367 Coils Coil 193 213 - -
Gabi4217g00025 367 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00025 Gabi-Chr4217 287466 288722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00025 1 366 HSF AT1G46264 54.756 1.78e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi4217g00025 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00025 K09419 - gmx:100781389 580.867