Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00024 ATGCAAGGGCAGAGAGGTACAATTGGTTCCATGTCTGAAACCTTAGAATTTGATTGTGGATCTACATCGAGTAATGCTGCTGTGGATCAGTCTATTTGCTGGAATAATGTGCGGAATCCTGCAGAAAATCAAATACCTGAATATATACTTTCTCCCAGTGATATAAACCCATCTTATGTGAATCCTATAAACCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCTAGCTCTAGTAATGCACCAAATGAGATTAACAATAACGAGCAAAAAAGAGAACTTGGATGGTCATCATCCATTAGTTCTGGTGCATTAATTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAACCAATGTTCTTTCACTGGACAACACCAGTACAGGTCCTATGTATATGCGGAGCTCCAATTCTCATTTAATGTCCCAGAATCTCAACTTAAATGCAGGTTTGGCAGACAGTGGCAGTGATAATAGTCAACAACTGGAGCACCCTAACTTGCGTAAGTCCAGTCTATCAGTGAATGAGTCTGCTCCATCCAATATTGGCTCTGGTTCTTTTTTGCTTCCTTCTAGAAATAATGGCTTCTTAGAAGATACTGATGGTAGGCCAGGTTGTTCAGTGGACACTCACCGTGTATCCTGTAAAAGAAAAGCTGTGGATGGAAATGCTGGCCAATCTTCAGATGGTGGAAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCTTGGCACTCTATCCCTACTCAGGGTAATGCTGGGTACATTTCAAGCAGATCTATTTCCTCAGAACAGGTAAACGCGAGACTTGGCCTGGCTATGGGCGATGAAGCCTCTGAAAGTGTTCCTGATTCAAACATTGCAGGAAACTCAGAAAGCTTCCACAGGAATTTCCGTCTGAGGATAAATCCTTCAAACCAACAAAATTTCATTCCTCCTACTGCATTCGCAACTGGGAGCATGATTCGGCATTCTGGTGCTTCTTCTTCTCAGGTGTCACAAAGGTTTCATCCTGTCGATAATTCTCTGAACCTGAGGTCAGTACCACCAATAGATAATATGATTCCTCACAGCCAGCCGCTCGTAATCCATGTTCCTGCTTTGCCAAGGAATAGGCAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAATATCCATTCATCAAATTCAGCCATATGTCCGGACAGGGATAATCTACCACAGGAGAATTCAAGCTCAAGAAGTATGTCCAGAAATATTTTAGAACACCCAGTGTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAATTAGAGCTTCAAGTTCAAGTAGTGCAAATTTAAATATTCCAGGAAATGTTGCTTCTTCTTTGCGGATTGGATCCAATCCAGCTGTCAATCCCTCATCTGCCTCAACTTGGGTTTCTCGTCCTAATCCTCCGCAGCATCCTCGGAGGTTATCTGAATATGTTCGCCGGTCCTTGTTTTCTCCTGGTTCTGAGGCTACTGGCGGTTCGAGCAATAATTATTCTTCATTGCGCTCTGGTCCTTCTACATCTGAATCGAGGTTGTTATCATCTGGGGCACACCCAAGATCATCTTCATGGTTGGAGAGGCAGGGAGATAGTGACTTTGGAATTCCCTATTCATTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGGATGTTATGATCCTTGATCAGACTGTATTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGAGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACTTTTGAAACAGAAAAAGTATTCAATTGAAACGGAATCTCAGCTTGATGCAGAGCCCTGTTGTGTTTGTCAGGAGAATTACGGTGATGGAGATGATATCGGAACGCTTGATTGTGGCCATGATTACCATAGCAACTGTATTAAACAGTGGCTAATGCATAAGAACCTGTGTCCTATTTGTAAGACAACGGGTTTGACAACATGA 2070 0.4256 MQGQRGTIGSMSETLEFDCGSTSSNAAVDQSICWNNVRNPAENQIPEYILSPSDINPSYVNPINHEWQNLSGWSLGEPSSSNAPNEINNNEQKRELGWSSSISSGALIGPRLEERRLEPTNVLSLDNTSTGPMYMRSSNSHLMSQNLNLNAGLADSGSDNSQQLEHPNLRKSSLSVNESAPSNIGSGSFLLPSRNNGFLEDTDGRPGCSVDTHRVSCKRKAVDGNAGQSSDGGSSSYSQHTDGSAWHSIPTQGNAGYISSRSISSEQVNARLGLAMGDEASESVPDSNIAGNSESFHRNFRLRINPSNQQNFIPPTAFATGSMIRHSGASSSQVSQRFHPVDNSLNLRSVPPIDNMIPHSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSAICPDRDNLPQENSSSRSMSRNILEHPVFVPATDLRNLVQNPTIRASSSSSANLNIPGNVASSLRIGSNPAVNPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSEATGGSSNNYSSLRSGPSTSESRLLSSGAHPRSSSWLERQGDSDFGIPYSLRTLAVASEGSSRLVSEDVMILDQTVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQKKYSIETESQLDAEPCCVCQENYGDGDDIGTLDCGHDYHSNCIKQWLMHKNLCPICKTTGLTT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00024 689 Pfam Ring finger domain 642 683 IPR001841 -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 150 191 - -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 457 536 - -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 227 249 - -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 377 414 - -
Gabi4217g00024 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 221 249 - -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 498 536 - -
Gabi4217g00024 689 SUPERFAMILY RING/U-box 629 685 - -
Gabi4217g00024 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 687 IPR045191 GO:0061630
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 457 478 - -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 121 138 - -
Gabi4217g00024 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Gabi4217g00024 689 MobiDBLite consensus disorder prediction 119 138 - -
Gabi4217g00024 689 SMART ring_2 642 682 IPR001841 -
Gabi4217g00024 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00024 Gabi-Chr4217 256807 263216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00024 1 689 C3H Transcription Factor Family AT2G15530 30.656 3.97e-70 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00024 - - gmx:100783014 1093.18