Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00022 ATGCAAGGGCAGAGAGGTACAATTGGTTCCATGTCTGAAACCTTAGAATTTGATTGTGGATCTACATCGAGTAATGCTGCTGTGGATCAGTCTATTTGCTGGAATAATGTGCGGAATCCTGCAGAAAATCAAATACCTGAATATATACTTTCTCCCAGTGATATAAACCCATCTTATGTGAATCCTATAAACCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCTAGCTCTAGTAATGCACCAAATGAGATTAACAATAACGAGCAAAAAAGAGAACTTGGATGGTCATCATCCATTAGTTCTGGTGCATTAATTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAACCAATGTTCTTTCACTGGACAACACCAGTACAGGTCCTATGTATATGCGGAGCTCCAATTCTCATTTAATGTCCCAGAATCTCAACTTAAATGCAGGTTTGGCAGACAGTGGCAGTGATAATAGTCAACAACTGGAGCACCCTAACTTGCGTAAGTCCAGTCTATCAGTGAATGAGTCTGCTCCATCCAATATTGGCTCTGGTTCTTTTTTGCTTCCTTCTAGAAATAATGGCTTCTTAGAAGATACTGATGGTAGGCCAGGTTGTTCAGTGGACACTCACCGTGTATCCTGTAAAAGAAAAGCTGTGGATGGAAATGCTGGCCAATCTTCAGATGGTGGAAGTTCTAGCTACAGTCAGCATACAGATGGTAGTGCTTGGCACTCTATCCCTACTCAGGGTAATGCTGGGTACATTTCAAGCAGATCTATTTCCTCAGAACAGGTAAACGCGAGACTTGGCCTGGCTATGGGCGATGAAGCCTCTGAAAGTGTTCCTGATTCAAACATTGCAGGAAACTCAGAAAGCTTCCACAGGAATTTCCGTCTGAGGATAAATCCTTCAAACCAACAAAATTTCATTCCTCCTACTGCATTCGCAACTGGGAGCATGATTCGGCATTCTGGTGCTTCTTCTTCTCAGGTGTCACAAAGGTTTCATCCTGTCGATAATTCTCTGAACCTGAGGTCAGTACCACCAATAGATAATATGATTCCTCACAGCCAGCCGCTCGTAATCCATGTTCCTGCTTTGCCAAGGAATAGGCAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAATATCCATTCATCAAATTCAGCCATATGTCCGGACAGGGATAATCTACCACAGGAGAATTCAAGCTCAAGAAGTATGTCCAGAAATATTTTAGAACACCCAGTGTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAATTAGAGCTTCAAGTTCAAGTAGTGCAAATTTAAATATTCCAGGAAATGTTGCTTCTTCTTTGCGGATTGGATCCAATCCAGCTGTCAATCCCTCATCTGCCTCAACTTGGGTTTCTCGTCCTAATCCTCCGCAGCATCCTCGGAGGTTATCTGAATATGTTCGCCGGTCCTTGTTTTCTCCTGGTTCTGAGGCTACTGGCGGTTCGAGCAATAATTATTCTTCATTGCGCTCTGGTCCTTCTACATCTGAATCGAGGTTGTTATCATCTGGGGCACACCCAAGATCATCTTCATGGTTGGAGAGGCAGGGAGATAGTGACTTTGGAATTCCCTATTCATTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTTCGCAATGTTTTGGGCCTTATGCGAAGGGGTGGGAACCTGCGATTCGAGGATGTTATGATCCTTGATCAGACTGTATTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGAGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACTTTTGAAACAGAAAAAGTATTCAATTGAAACGGAATCTCAGCTTGATGCAGAGCCCTGTTGTGTTTGTCAGGAGAATTACGGTGATGGAGATGATATCGGAACGCTTGATTGTGGCCATGATTACCATAGCAACTGTATTAAACAGTGGCTAATGCATAAGAACCTGTGTCCTATTTGTAAGACAACGGGTTTGACAACATGA 2121 0.4286 MQGQRGTIGSMSETLEFDCGSTSSNAAVDQSICWNNVRNPAENQIPEYILSPSDINPSYVNPINHEWQNLSGWSLGEPSSSNAPNEINNNEQKRELGWSSSISSGALIGPRLEERRLEPTNVLSLDNTSTGPMYMRSSNSHLMSQNLNLNAGLADSGSDNSQQLEHPNLRKSSLSVNESAPSNIGSGSFLLPSRNNGFLEDTDGRPGCSVDTHRVSCKRKAVDGNAGQSSDGGSSSYSQHTDGSAWHSIPTQGNAGYISSRSISSEQVNARLGLAMGDEASESVPDSNIAGNSESFHRNFRLRINPSNQQNFIPPTAFATGSMIRHSGASSSQVSQRFHPVDNSLNLRSVPPIDNMIPHSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSAICPDRDNLPQENSSSRSMSRNILEHPVFVPATDLRNLVQNPTIRASSSSSANLNIPGNVASSLRIGSNPAVNPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSEATGGSSNNYSSLRSGPSTSESRLLSSGAHPRSSSWLERQGDSDFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDQTVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQKKYSIETESQLDAEPCCVCQENYGDGDDIGTLDCGHDYHSNCIKQWLMHKNLCPICKTTGLTT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00022 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 150 191 - -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 457 536 - -
Gabi4217g00022 706 SUPERFAMILY RING/U-box 646 702 - -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 377 414 - -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 227 249 - -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 221 249 - -
Gabi4217g00022 706 FunFam E3 ubiquitin-protein ligase MBR2 627 704 - -
Gabi4217g00022 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 704 IPR045191 GO:0061630
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 498 536 - -
Gabi4217g00022 706 Pfam Ring finger domain 659 700 IPR001841 -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 457 478 - -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 121 138 - -
Gabi4217g00022 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Gabi4217g00022 706 MobiDBLite consensus disorder prediction 119 138 - -
Gabi4217g00022 706 SMART ring_2 659 699 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00022 Gabi-Chr4217 256807 263216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00022 1 706 C3H Transcription Factor Family AT2G15530 32.129 9.50e-82 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00022 - - gmx:100783014 1135.94