Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00016 ATGGTGCAAGTTAATGAGAGTCTCAACGCCGATGCGGAGGTTCCCACTCCCGCTCACACTGAAAATCAGAACCCAACACCGAACCAGCTTATGCATACCGCATTGTACATAGAGGATCTTGATCGTAACGTCATCGAATATGATCTCTACGAACTCTTCAATCCGATCGGTGAAGTTGCATCTGTTCGTATCTGCAGGGACTATATCACTGACGAATCCCGGGGTTTCGGCTATGTCAATTTCACTCACGCTCAAGACGCTGCAAAAGCTATCGATGAGCTAAATTTCACTCCGCTGAACAACAAACCCATTAGGATAATGCTTTCTAATCGGGGCCCTGATCCTCGAAGGAGTAGTGCTGCTAATATTTTCATTAAGAATTTGGCCAAGGAAATCGATGACATAGCTTTGCATGAAACTTTTTCGTCTTTTGGAAAAATTCTTTCTTGCAAGGTAGCGACTGATGATTCTGGCGAGTCTAAAGGCTACGGTTTTGTGCAATTTGAGAAGGAAGAATCTGCACAGAATGCAATCGAAAAGTTAAACAGAATGCTGATCAATGATAAAAAGGTCTACGTAGGTCGTTTCCTACGAAAGCAGGACAGAGAGAGGGCAAAGTTTAATAATCTCTATGTGAAAAACTTGTCCGAGTCCACGACGGATGAGGACTTGCAGAAAACTTTTGGAGAATATGGGACCGTTATTAGTGCTGTGGTGATGAGAGAAGAAGATGGTACATCGAAGTGTTTCGGTTTTGCCAGTTTTGAAAGAGCAGATGCCGCTACTAAAGCTCAGGAGGCACTTAATGGAAAGAGATTTGATGGTAAGAAATGGTATGTCGGAAAAGCCCTGAAAAAATCTGAAAGATTGCTTGAACTGAAAGGACGATATGGGGAGAGTTCGAAGGGATCTGCTGGCAACTATCAGGATGAAAACTTGTATGTCGAGAACTTGGATCATAGCGTTACTGATGAAAAACTAAGAGAATTGTTCTCTGAGTTTGGTATAATAACCACATGCAAGGTTATGCGAAGTATACAAGGATTTAGTAGAGGATGGGGATTTGTTGCATTTTCAACTCCTGAGGAAGCTACACGAGCTCTTAATGCGCTGAATGGTCAAATGTTTGCTCGCAAACCCCTCCATTTTACTGTTGCACGGAGAAATGAAGAGGGAAGAGTAACGTTACAGGCTCAATTTTCACAGATCAGGCCCGTTGCAACGGCCCCTTCTGTTGCAAATCGCTTGTCAATGCACCATCCCAGGGCTCCTGGACTAGGCCCACAATCATTGTACAGGCAGCCACGTCCCCCCTTCATAGATCAAGCTGGATTTGGTTACCCGCGGCAACTTGTTCCTGGAATGGGACCACGTGTTCCTCCATTGCCAAACTTCTTTCCTCCAATAGTTCCGCCGGGTCAACTAGGTCAGCGCCCAGCCATGCAACAATTCCCGCGGCCGTTACCATGGATGCAACCGATTGCTCCAATGGGACGTGACTATCGTTACCCTCCTGGTCGCAACCTGATAGATACTCGACTTCCACCGTTAGCTGGAAGACTTACATCAACTTATGACGTGAGTAGTCAGCCCATCGAGAATGACGCGGAACAGCCGATCATCCCCTTCGACGTGTACCTTGAAAATACTCGTCCTGAAATACGGAGGATTATCCTTGGAGAAGTTTTATACCCGCTAGTAGATGAACTGGAGCATGAATCAGCACCAAAGGTTACAGGTATGCTTTTGGAGATGGACCACAATGAGGTAATACATCTGATTGAGTCAGCAGATGATCTCAAAACAAAAGTTGCTGAGGCCATGTATGTGTTGAGAAATCATGAACGGGAGCTATCAAACGAACAACTGGTTTCACTCTTTCTGGATGATGACTCTTAG 1899 0.4513 MVQVNESLNADAEVPTPAHTENQNPTPNQLMHTALYIEDLDRNVIEYDLYELFNPIGEVASVRICRDYITDESRGFGYVNFTHAQDAAKAIDELNFTPLNNKPIRIMLSNRGPDPRRSSAANIFIKNLAKEIDDIALHETFSSFGKILSCKVATDDSGESKGYGFVQFEKEESAQNAIEKLNRMLINDKKVYVGRFLRKQDRERAKFNNLYVKNLSESTTDEDLQKTFGEYGTVISAVVMREEDGTSKCFGFASFERADAATKAQEALNGKRFDGKKWYVGKALKKSERLLELKGRYGESSKGSAGNYQDENLYVENLDHSVTDEKLRELFSEFGIITTCKVMRSIQGFSRGWGFVAFSTPEEATRALNALNGQMFARKPLHFTVARRNEEGRVTLQAQFSQIRPVATAPSVANRLSMHHPRAPGLGPQSLYRQPRPPFIDQAGFGYPRQLVPGMGPRVPPLPNFFPPIVPPGQLGQRPAMQQFPRPLPWMQPIAPMGRDYRYPPGRNLIDTRLPPLAGRLTSTYDVSSQPIENDAEQPIIPFDVYLENTRPEIRRIILGEVLYPLVDELEHESAPKVTGMLLEMDHNEVIHLIESADDLKTKVAEAMYVLRNHERELSNEQLVSLFLDDDS 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00016 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Gabi4217g00016 632 Pfam Poly-adenylate binding protein, unique domain 547 611 IPR002004 GO:0003723
Gabi4217g00016 632 Gene3D - 297 394 IPR012677 -
Gabi4217g00016 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Gabi4217g00016 632 CDD RRM2_I_PABPs 120 195 IPR045305 -
Gabi4217g00016 632 SUPERFAMILY PABC (PABP) domain 462 620 IPR036053 GO:0003723
Gabi4217g00016 632 SMART poly_2 551 614 IPR002004 GO:0003723
Gabi4217g00016 632 PANTHER RNA BINDING PROTEIN 32 95 - -
Gabi4217g00016 632 SMART rrm2_1 122 194 IPR003954 GO:0003676
Gabi4217g00016 632 SMART rrm2_1 312 384 IPR003954 GO:0003676
Gabi4217g00016 632 SMART rrm2_1 209 281 IPR003954 GO:0003676
Gabi4217g00016 632 SUPERFAMILY RNA-binding domain, RBD 312 402 IPR035979 GO:0003676
Gabi4217g00016 632 Gene3D - 114 201 IPR012677 -
Gabi4217g00016 632 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4217g00016 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Gabi4217g00016 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Gabi4217g00016 632 FunFam Sex lethal, isoform D 18 114 - -
Gabi4217g00016 632 SUPERFAMILY RNA-binding domain, RBD 121 288 IPR035979 GO:0003676
Gabi4217g00016 632 CDD RRM3_I_PABPs 207 286 - -
Gabi4217g00016 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 382 IPR000504 GO:0003723
Gabi4217g00016 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Gabi4217g00016 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Gabi4217g00016 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Gabi4217g00016 632 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 612 IPR006515 GO:0003723
Gabi4217g00016 632 Coils Coil 597 617 - -
Gabi4217g00016 632 Gene3D - 543 626 - -
Gabi4217g00016 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Gabi4217g00016 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 331 343 IPR002343 GO:0003723|GO:1990904
Gabi4217g00016 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 208 223 IPR002343 GO:0003723|GO:1990904
Gabi4217g00016 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 316 331 IPR002343 GO:0003723|GO:1990904
Gabi4217g00016 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 298 315 IPR002343 GO:0003723|GO:1990904
Gabi4217g00016 632 SMART rrm1_1 312 384 IPR000504 GO:0003723
Gabi4217g00016 632 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gabi4217g00016 632 SMART rrm1_1 122 194 IPR000504 GO:0003723
Gabi4217g00016 632 SMART rrm1_1 209 281 IPR000504 GO:0003723
Gabi4217g00016 632 FunFam Polyadenylate-binding protein 115 202 - -
Gabi4217g00016 632 Gene3D - 3 113 IPR012677 -
Gabi4217g00016 632 Gene3D - 202 296 IPR012677 -
Gabi4217g00016 632 SUPERFAMILY RNA-binding domain, RBD 21 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00016 Gabi-Chr4217 214084 217637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00016 1 628 Eukaryotic Initiation Factors Gene Family AT4G34110 51.869 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00016 K13126 - gmx:100784442 708.753