Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00014 ATGGAAGAAGAAAGAGATTGTTGTTCCACGAATTCAAGAAGCCCCTCATCAGAGAAGCGCAAGCAGCAAGACAAACCGTACAGAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTAGAGAACCCAACAAAAGGTCCAGGATTTGGTTGGGTTCTTACACCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTATTTCACCTGAGGGGCCCTTCGGCTCGCCTCAACTTCCCCGAATTGTTATTCCAAGACCAAGACCAACAACACGACGGTTCCGTCGACATGTCCGCCGATTCTATACGCAAAAAAGCCACCCAAGTCGGCGCAAGAGTGGATGCTCTCCAAACCGCTCTCCAAGCCTCCTCGAACTCCACTTCAACTAAAGTCGTTACCTTCGACAAACCAGACTTGAACGAGTATCCAAAACCTGAAGATTCTCTTGACCTTGAAGATTATCACTGA 477 0.5094 MEEERDCCSTNSRSPSSEKRKQQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFHLRGPSARLNFPELLFQDQDQQHDGSVDMSADSIRKKATQVGARVDALQTALQASSNSTSTKVVTFDKPDLNEYPKPEDSLDLEDYH 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00014 158 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Gabi4217g00014 158 PIRSF PTI6 2 153 IPR017392 GO:0003700
Gabi4217g00014 158 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
Gabi4217g00014 158 MobiDBLite consensus disorder prediction 140 158 - -
Gabi4217g00014 158 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gabi4217g00014 158 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gabi4217g00014 158 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Gabi4217g00014 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 151 - -
Gabi4217g00014 158 MobiDBLite consensus disorder prediction 126 158 - -
Gabi4217g00014 158 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Gabi4217g00014 158 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Gabi4217g00014 158 MobiDBLite consensus disorder prediction 1 28 - -
Gabi4217g00014 158 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Gabi4217g00014 158 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00014 Gabi-Chr4217 180474 181562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00014 21 124 AP2-EREBP Transcription Factor Family AT5G67190 72.222 3.58e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4217g00014 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00014 K09286 - gmx:100801528 226.098