Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00007 ATGAGGAAGTGGTGGCTGTTGCTGTTGTTGTTGTTCCTGGTTTCAAATGATGTATTTTGCTCTAGCTCCAAACTCGCAGACGATGCTGGCGCCTTGCTTGCATTCAAATCGAAAGCTGATGTAAACAAGAACCTCCACTTTAAGGGTCTCCGTATGTGTTTGTGGGAAGGTGTGGAATGCAACGGACTCAAAGTGGTACATCTCGTTCTGCAAGGTTTAGATCTCGGTGGCGTATTCGCTCCAAACACATTGTCTCTTCTTGACCAACTCAGAGTCCTTAGTTTGCAGAACAACTCCTTAACAGGACCCATACCTGACCTCTCTGGTCTCTTCAATCTCAAAAGCCTCTTCCTTGACAACAACCACTTCACCGGTTCTCTCCCTCCTTCACTCTTCTCCCTTCACAGGCTTCGAACCTTGGATTTCTCTCACAACAATCTCTCTGGACCCATCCCCACTGGCTTCATCAAACTAGATCGCCTCTACTATCTCCGTTTAAGTTGGAACACATTCAATGGAACCATCCCTCCTTTTAACCAGTCCTCTCTCCGAACCCTCGACCTCTCCGGCAACAACCTCACCGGTCCCATTCCCGTTACCCCGGCACTCTTCCGTTTTGAGCCCTCATCCTTCTCTTCCAACCCAGGTCTCTGCGGTGAGATCATCCACAAAGAATGCCACCCCACCGCGCCTTTCTTCAGACCCACATCGCCGCCGACGGCGGGGCTCGGCCAGAGCGCGAAAGTCCACGGCTTTTTCCGGCAGCCGTACGAGAAAAAGCGCGACCGGAGGGCGGTGATTATCGGGTTCTCAACCGGAGTATTCGTTCTGATCGGTTCGCTGTTGTGCTTCGTGGTGGCCATAAAGAAACAGAGAAACAAGAAAGAAGGTGGTTCGAGTATAATAATGGCTTCGGATGCGGCGGCGACGGCAGAAGCTGCGGCTGCGATGCAAATGGAGCAAGAGAGGGAGTTGGAGGAGAAGGTGAAGAGAGCGCAAGTGGCAAAGAGTGGGAGTTTGGTATTCTGTGCGGGGGAGGCACAGGTGTATACCCTGGACCAGTTGATGAAGGGTTCAGCTGAGCTATTGGGCAGAGGGTGTTTGGGAACAACGTATAAGGCGGTGCTTGATAACCGTCTGATCGTGACGGTGAAAAGGCTTGATGCTGGGAAAATGGCAGCTTCAGTCGCAACCAAGGAAGTGTTCGAGCGTCACATGGAATCCGTGGGTGGCCTTCGCCATCCCAATTTGGTTCCCCTCAGGGCTTATTTTCAGGCCAAACAAGAAAGACTCATTATCTACGATTACCAGCCTAATGGAAGTCTCTTCTCCCTCATACACGGTTCCAGATCTAGCAGGGCAAGGCCATTGCACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGACTATCCTACATTCACCAGGCATGGAGATTGGTCCATGGCAATCTCAAGTCCTCCAATGTTCTCCTCGGACCCGATTTCGAGGCATGCATCACAGACTACTGTCTATCCGTGTTGACCAACCCATCTAGCTATGATGAAGTTAGTGATTCTGCAGCCTATAGAGCACCAGAGACTCGCAATCCAAATCACCAGCCAACCCCAAAATCTGATGTTTATGCATATGGGATTTTGTTGCTAGAGCTTCTGACGGGGAAAACTCCTTCTGAGCTACCATTTTTGGTTCCGGGTGATATGTCAAGTTGGGTGAGGTCCATCAGGAATGACAATGGGAATGAAGATAGCCGAATGGATATGCTTCTTCAGGTGGCTACAACTTGTAGCTTAACTTCACCTGAGCAAAGACCCACTATGTGGCAGGTCTTGAAAATGTTGCAGGAAATCAAAGAGATTGTGCTGTTGGAGGATGGTGAATTCGACCTGCGCAATAGTGATGCCATGCCTTAA 1920 0.5 MRKWWLLLLLLFLVSNDVFCSSSKLADDAGALLAFKSKADVNKNLHFKGLRMCLWEGVECNGLKVVHLVLQGLDLGGVFAPNTLSLLDQLRVLSLQNNSLTGPIPDLSGLFNLKSLFLDNNHFTGSLPPSLFSLHRLRTLDFSHNNLSGPIPTGFIKLDRLYYLRLSWNTFNGTIPPFNQSSLRTLDLSGNNLTGPIPVTPALFRFEPSSFSSNPGLCGEIIHKECHPTAPFFRPTSPPTAGLGQSAKVHGFFRQPYEKKRDRRAVIIGFSTGVFVLIGSLLCFVVAIKKQRNKKEGGSSIIMASDAAATAEAAAAMQMEQERELEEKVKRAQVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRLDAGKMAASVATKEVFERHMESVGGLRHPNLVPLRAYFQAKQERLIIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTNPSSYDEVSDSAAYRAPETRNPNHQPTPKSDVYAYGILLLELLTGKTPSELPFLVPGDMSSWVRSIRNDNGNEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDGEFDLRNSDAMP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00007 639 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
Gabi4217g00007 639 ProSiteProfiles Protein kinase domain profile. 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4217g00007 639 ProSiteProfiles Leucine-rich repeat profile. 89 111 IPR001611 GO:0005515
Gabi4217g00007 639 FunFam Nuclear pore complex protein NUP107 25 177 - -
Gabi4217g00007 639 Gene3D Transferase(Phosphotransferase) domain 1 438 627 - -
Gabi4217g00007 639 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 620 IPR046959 -
Gabi4217g00007 639 SUPERFAMILY Protein kinase-like (PK-like) 361 620 IPR011009 -
Gabi4217g00007 639 SUPERFAMILY L domain-like 40 218 - -
Gabi4217g00007 639 Coils Coil 308 335 - -
Gabi4217g00007 639 Gene3D Ribonuclease Inhibitor 180 226 IPR032675 -
Gabi4217g00007 639 Pfam Protein kinase domain 361 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4217g00007 639 Pfam Leucine rich repeat 112 169 IPR001611 GO:0005515
Gabi4217g00007 639 Pfam Leucine Rich Repeat 182 212 IPR001611 GO:0005515
Gabi4217g00007 639 Gene3D Phosphorylase Kinase; domain 1 320 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00007 Gabi-Chr4217 118898 122615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00007 28 637 Receptor kinase-like Gene Family AT5G43020 59.906 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4217g00007 Pkinase 3.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00007 - - gmx:100817172 989.949