Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4217g00003 ATGGCTCACCACCATTATCAACAACCTGAGCCACATGACAACCCAAAGTTCCTTCTCGATGCACTGTACTGTTCAGAAGAACATTGGGAGGAACAAGTAGAAGTAGTCGAAGATGAATTAGAGGATGAGTACTGTTGTGATTCCCTTAGCACCAATACTAGTACTAGCACAATAATAAACTCTCCTCCTTTGTTTCTAGAAAAGGACATGTTCTGGGACGATGAAGAGCTAACATCATTGCTTGCCAAAGAACAACAAAATCCACTTTGCACCTTCCTCCAAATCAATCCTGTTTTGGAGGTTGCTCGCAGAGAAGCCGTGGAGTGGATGCTGAAAGTGAATGCCCACTACTCCTTCTCTGCTCTCACCGCTGTTCTTGCTGTTGATTACCTCGACAGGTTCCTCTTCAGCTTCAGGTTTCAGAATGGGAAGCCATGGATGACTCAACTTACTGCTGTCGCTTGCCTCTCTCTCGCTGCAAAGGTGGAGGAGACCCAAGTTCCCCTTTTACTAGACCTACAAGTGGAGGATAGTAGATACTTGTTTGAAGCCAAAACGATTAAAAAGATGGAGATTTTGGTCCTTTCAACTCTTGGATGGAAGATGAATCCAGCAACCCCTGTCTCGTTTCTTGATTTTATTACAAGAAGACTTGGATCGAAATATCATCTCTGCTTGGAGTTCCTCAGGAGGTGTAATGGTGTTCTTCTCTCTGTCATTGCAGATTCCAGGTTTATGTGTTATTTACCTTCTGTGTTGGCAAATGCTACAATGATGCACGTTGTCAATTGCGTGGAGCCTCGTCTCGGAGTTGCATACCAAAGCCAGCTTCTTGGTATTGTTGGAATCAACAAGGAGAAGGTGGAAGAGTGTTGCAAGCTTATGTTGGAACTGGGGTCAGGGTGCGACCAGGGGAAGCAATGCATGAAACGCAAGTTTGGGTCCATCCCTGGAAGCCCAAATGGCGTCATGGATGTGTCTTTTAGCTGTGATAGCTCCAATGACTCATGGGGGGTTGCTACTTCTGTGTCATCCTCACCGGAACCGTTGTCCAAGAAGACTAGGACTCAAGACCAGCTTCTACTAAACTGTTCCAAACCAGATTTTCTCAGCATTCCTCGCTAG 1125 0.456 MAHHHYQQPEPHDNPKFLLDALYCSEEHWEEQVEVVEDELEDEYCCDSLSTNTSTSTIINSPPLFLEKDMFWDDEELTSLLAKEQQNPLCTFLQINPVLEVARREAVEWMLKVNAHYSFSALTAVLAVDYLDRFLFSFRFQNGKPWMTQLTAVACLSLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMEILVLSTLGWKMNPATPVSFLDFITRRLGSKYHLCLEFLRRCNGVLLSVIADSRFMCYLPSVLANATMMHVVNCVEPRLGVAYQSQLLGIVGINKEKVEECCKLMLELGSGCDQGKQCMKRKFGSIPGSPNGVMDVSFSCDSSNDSWGVATSVSSSPEPLSKKTRTQDQLLLNCSKPDFLSIPR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4217g00003 374 CDD CYCLIN_AtCycD-like_rpt2 206 295 - -
Gabi4217g00003 374 SMART Cyclin_C_2 205 332 IPR004367 -
Gabi4217g00003 374 FunFam CYCLIN D32 204 293 - -
Gabi4217g00003 374 FunFam D3-type cyclin 96 203 - -
Gabi4217g00003 374 CDD CYCLIN_AtCycD-like_rpt1 102 200 - -
Gabi4217g00003 374 SUPERFAMILY Cyclin-like 187 300 IPR036915 -
Gabi4217g00003 374 ProSitePatterns Cyclins signature. 103 134 IPR006671 -
Gabi4217g00003 374 Gene3D - 85 293 - -
Gabi4217g00003 374 PANTHER CYCLINS 77 296 IPR039361 -
Gabi4217g00003 374 Pfam Cyclin, C-terminal domain 206 329 IPR004367 -
Gabi4217g00003 374 Pfam Cyclin, N-terminal domain 94 203 IPR006671 -
Gabi4217g00003 374 Gene3D - 89 203 - -
Gabi4217g00003 374 SMART cyclin_7 108 196 IPR013763 -
Gabi4217g00003 374 SUPERFAMILY Cyclin-like 71 203 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4217g00003 Gabi-Chr4217 70645 72559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4217g00003 7 369 Core Cell Cycle Gene Families AT5G67260 48.128 5.83e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4217g00003 K14505 - aprc:113874132 469.544