Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4213g00002 ATGGATAACGAGATTGATGTTCCTCCTTTCTTTCTCTGCCCCATTTCGTTAGAAATCATGAAGGATCCAGTGACAGTTTCCACAGGCATAACCTACGATAGAGAGAGCATTGAGAAATGGCTCTTTTCTGAGAAAAACAAGACATGTCCTGTCACAAACCTACCTCTTCCTCTGCTCTCAGATTGCACTGATCTCACCCCAAATCACACCCTTCGTAGATTGATTCAAGCATGGTGTACAATGAACTCTTCTCACGGCATTCAAAGGATTCCAACTCCCAAACCTCCAGTCAACAAAAACACCATAGAAAAACTCCTCAAAGATGCTTCTGACAAGCCTCAGTTGCAGATCCAATGCTTAAGAAGCCTCAAATCCATTGCTTCTGAGAGTGAAACAAATAGACGCTGCATCGAATCCTCTGGTGCTGTTCATTTCTTAGCATCATTGGTAATCAACAACATCAAAGAATTAGAGTCTTGCCTAGATGACGATGATGATGTGTTTGACTTGAAAACAAGCGCAGGTGATGATGCTTTATGCATCCTCCATAGTCTAAATTTATCAGAAACTGGGTTGAAGACCCTTTTAGGCTTCAAAGATGGAGAATTTATGAACTCCTTAACAAGGGTCATGCAAAGGGGAATCTATGACTCACAAGCTTATGCAGTTTTATTGATGAAATCTATGTCTGAAGTGGCTAATTCTGTTGACATAGTTAATCTAAGAAATGAGTTGTTCATTGCATTAGTACATGTCCTTAAAGACCAGATTTCCCATAAGGCATCAAAAGCTACACTACAAACACTGATTCAACTCAGTCCTTGGGGGAGAAACAGGATCAAAGCAGTGGAAGCAGGAGCAATTCCAGTTTTGATTGAACTTCTTCTTGATTGTAAGGAAAGAAAGCCTTGTGAGATGATGCTAGTGCTCTTGGAGACTTTGTGCCAGTGTGCAGATGGAAGAGCTGAACTTTTGAGCCATGGTGCAGGGTTAGCCATTGTGTCAAAGAAGATTCTGAGGGTTTCTACAATGGCAAATGATAGGGCTGTGAAGATTCTATTGTCCATATCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAAATGCTGCAACTTGGTGTGGTGGCAAAACTTTGTTTGGTCCTTCAAGTTGATAGTGGAAGCAAGGCCAAGGAGAAAGCAAGAGAGATTCTCAAATTGCATGCTCGGTCTTGGAGGAATTCTCCTTGCATACCAAGCAATTTGCTTGCTTCATACCCAACAAGTGTATGA 1272 0.4151 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSEKNKTCPVTNLPLPLLSDCTDLTPNHTLRRLIQAWCTMNSSHGIQRIPTPKPPVNKNTIEKLLKDASDKPQLQIQCLRSLKSIASESETNRRCIESSGAVHFLASLVINNIKELESCLDDDDDVFDLKTSAGDDALCILHSLNLSETGLKTLLGFKDGEFMNSLTRVMQRGIYDSQAYAVLLMKSMSEVANSVDIVNLRNELFIALVHVLKDQISHKASKATLQTLIQLSPWGRNRIKAVEAGAIPVLIELLLDCKERKPCEMMLVLLETLCQCADGRAELLSHGAGLAIVSKKILRVSTMANDRAVKILLSISRFSATPSVVQEMLQLGVVAKLCLVLQVDSGSKAKEKAREILKLHARSWRNSPCIPSNLLASYPTSV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4213g00002 423 Gene3D - 97 408 IPR011989 -
Gabi4213g00002 423 ProSiteProfiles U-box domain profile. 6 85 IPR003613 GO:0004842|GO:0016567
Gabi4213g00002 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Gabi4213g00002 423 FunFam RING-type E3 ubiquitin transferase 1 88 - -
Gabi4213g00002 423 SUPERFAMILY RING/U-box 4 87 - -
Gabi4213g00002 423 SMART Ubox_2 10 78 IPR003613 GO:0004842|GO:0016567
Gabi4213g00002 423 Pfam U-box domain 7 83 IPR003613 GO:0004842|GO:0016567
Gabi4213g00002 423 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Gabi4213g00002 423 CDD RING-Ubox_PUB 8 56 IPR045210 -
Gabi4213g00002 423 SUPERFAMILY ARM repeat 102 388 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4213g00002 Gabi-Chr4213 30270 31544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4213g00002 1 420 U-box Gene Family AT3G52450 56.164 2.48e-172 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4213g00002 - - gmx:100809839 637.876