Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4207g00006 ATGGCCTTTGAGCACTACTATTCCCAGGATTGGAAAACCATCCCAAATGCTGTGACTGAGACAGAAAATTCCAATGGTTGTTTTGATTGCAACATCTGCTTGGACTCTGCACATGAACCAGTAGTGACCCTCTGTGGCCACCTTTATTGTTGGCGTTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAACACCCTCAATGCCCTGTTTGCAAGGATGATATATCCCACACCACTATGGTTCCTCTTTATGGTCGAGGCCATTCCCCTGCTTGTAATGAGCATGATGGAAAGGCATCCCGTAGAGATACTTTTGTACCACCAAGACCACCTGCTTCAGGTGCTCAATCTCTGTTGGCAACATCATCTCAAAGTGGTCAGCAACTTCCATATCGCAATCCTTATCAGAGTCAACATTTCAACCCTTCTCTATACCAAGATGAGGATGACACATCACAAATGCTCAATCTTGGTGCAACCATGGCACCAGGATTCCCCAACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTGTACAAGAGTCTTGGGCAACTCAGAAAATTTATATTCCTACCCGAATTCTTATCACATGATGGGAAGAAATAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGACAAATCATTGAACAGAATTTCAGTTTTTCTACTTTGTTGCTTTCTTCTGTGTCTTATCGTCTTCTAA 720 0.4417 MAFEHYYSQDWKTIPNAVTETENSNGCFDCNICLDSAHEPVVTLCGHLYCWRCIYKWLHVQSASLAPDEHPQCPVCKDDISHTTMVPLYGRGHSPACNEHDGKASRRDTFVPPRPPASGAQSLLATSSQSGQQLPYRNPYQSQHFNPSLYQDEDDTSQMLNLGATMAPGFPNLVVGMFGEMFCTRVLGNSENLYSYPNSYHMMGRNSPRLRRQEMQADKSLNRISVFLLCCFLLCLIVF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4207g00006 239 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Gabi4207g00006 239 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Gabi4207g00006 239 MobiDBLite consensus disorder prediction 120 135 - -
Gabi4207g00006 239 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Gabi4207g00006 239 SMART ring_2 30 76 IPR001841 -
Gabi4207g00006 239 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Gabi4207g00006 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 90 IPR013083 -
Gabi4207g00006 239 SUPERFAMILY RING/U-box 26 89 - -
Gabi4207g00006 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi4207g00006 239 MobiDBLite consensus disorder prediction 97 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4207g00006 Gabi-Chr4207 60131 62071 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4207g00006 12 225 C3H Transcription Factor Family AT4G27470 40.000 2.86e-46 152