Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4207g00004 ATGGCCTTTGAGCACTACTATTCCGAGGATTGGAAAACCATCCCAAAGGCTGTGACTGAGACAGAAAATTACAATGGTTGTTTTGATTGCAACATCTGCAAAGACCCTGCACGTGAACCAGTAGTGACCCTCTGTGGCCATCTTTATTGTTGGCCTTGCATCTACAAGTGGCTCCATCATCAAAGTGTTGATTCTCTTGCACCGGATGAACACCCTCAATGCCCTGTTTGCAAGGATGATATATCCCACACCACTATGGTTCCTCTTTATGGCCGAGGCCATTCCCCAGCTTATAGAGATACTTTTATACCACCAAGACCAACTGCTTCAGGTGCTCAATCTCTGTTGGCAACATCATCTCAAAGTGTTCAGCAACTTCCATATCGAAATCCTTATCAGAGTCAACATTTCAACCCTTCTCTATACCAAGATGAGGATGACACATCACAAATGCTCAATCGTGGTGCCACCATGGCACCAGGATTCCCCAATCTTGTGGTTCGGATGTTTGGAGAGATGTTTTGTACAAGAGTTTTTGGCAACTCAGAAAATTTATACGCCTACCCGAATTCTTATCACATGATGGGAAGTAATAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGACAAATTCTTGAACAGAATTTCAATTTTTCTAATTTGCTGCTTTCTCATGTGTCTTATCGTCTTTTAA 696 0.431 MAFEHYYSEDWKTIPKAVTETENYNGCFDCNICKDPAREPVVTLCGHLYCWPCIYKWLHHQSVDSLAPDEHPQCPVCKDDISHTTMVPLYGRGHSPAYRDTFIPPRPTASGAQSLLATSSQSVQQLPYRNPYQSQHFNPSLYQDEDDTSQMLNRGATMAPGFPNLVVRMFGEMFCTRVFGNSENLYAYPNSYHMMGSNSPRLRRQEMQADKFLNRISIFLICCFLMCLIVF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4207g00004 231 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 122 - -
Gabi4207g00004 231 SUPERFAMILY RING/U-box 25 90 - -
Gabi4207g00004 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Gabi4207g00004 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
Gabi4207g00004 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 136 IPR013083 -
Gabi4207g00004 231 SMART ring_2 30 77 IPR001841 -
Gabi4207g00004 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi4207g00004 231 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4207g00004 Gabi-Chr4207 41367 42933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4207g00004 23 217 C3H Transcription Factor Family AT4G27470 39.234 1.07e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4207g00004 K10666 - gmx:100779793 370.548