Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4207g00002 ATGCAAGGTCAAGAAGCAGTGAAAGAAGACGACGATGAAGGCCCACCACCAGGGTGGCAACCTCTCCCCATTCCGCCGCCGCCGTCACGCCCATCCAGTTTGGCTCAAATGGTTTGTGGTTCTTGTCGTCGCCTGCTTTCATATCCAAGAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACGGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAATGTGGGAGTTGTGCGGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGGTGTTCCTCATGCCGATTTGTGACAGAAATCGGGGAACAAAACAAGCGGCCTCCATTGTCTGTACAACAAAGGAAACCAGCTCCTTCCAAAACTGGTTGTTAG 384 0.4896 MQGQEAVKEDDDEGPPPGWQPLPIPPPPSRPSSLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCRFVTEIGEQNKRPPLSVQQRKPAPSKTGC 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4207g00002 127 PANTHER PROTEIN LSD1 26 121 IPR040319 -
Gabi4207g00002 127 MobiDBLite consensus disorder prediction 1 15 - -
Gabi4207g00002 127 MobiDBLite consensus disorder prediction 1 33 - -
Gabi4207g00002 127 MobiDBLite consensus disorder prediction 16 32 - -
Gabi4207g00002 127 Pfam LSD1 zinc finger 77 101 IPR005735 -
Gabi4207g00002 127 Pfam LSD1 zinc finger 39 63 IPR005735 -
Gabi4207g00002 127 NCBIfam zinc finger domain, LSD1 subclass 36 66 IPR005735 -
Gabi4207g00002 127 NCBIfam zinc finger domain, LSD1 subclass 74 102 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gabi4207g00002 zf-LSD1 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4207g00002 - - gmx:100780865 213.001