LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4206g00053	ATGGGTCGGAAAAACGGCGCCGTTTTAGTCAGCGAACCAGTCGCCGAAGAGGTCCACAACAGCCCCGAACTCGAATCCGAGAAGAAGAAGAAGAAAAAGAAGAAGAACAAAGACAAGCATCAAAACGAAACCAGCCCCAAAAGAAAGCTCAACGAACTCGACCTTGAAAACGGCACCGAATCAAACAAGAAGAAGAAGAAGCACCACAAGTCGAATGAGAACGTGGAGGAAACCGACGCAGACGGTAATCGTGATGAAACGGCGACGGGCGGGCTCGTGGTGGTTACCGGGAAGAACGCCGGAGACGCCAAATATGCGGCGGTGAAAACATTTGGGGATTCTGAGCTACCGGAGAACGTGTTGGAGTGCTGCAAGGGTTTCGAGAGGCCTTCTCCGATTCAGTCCCGAGCGTGGCCTTTCTTATTGGACGGTCGTGATCTGATTGGAATTGCGGCCACTGGCTCAGGGAAGACGTTGGCTTTTGGAATACCGGCTGTTATGCATGTTTTGAGGAATCGGAAGAGTAAAGCGCCCAAGGGTCGGAATCCTCTTTGCCTCATGCTCTCTCCCACTAGGGAGTTAGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGCGTGGAATCAATTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATATCTTCCCTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATACAGGATCTGATTGAGATGGGTGTCTGTCGCCTAAAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTACCAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAATCCTATAAAAGTTGTTGTAGGTTCAGAGGATTTAGCTGCCAATCACGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGATCACGGGATAAGCGTCTGGTTGCGTTACTGGAAAAGTACCACCAATCTCAGAGGAATCGAGTATTGGTTTTTGTCTTGTACAAATGGGAAACCTCTCGAGTTGAAAAAATGCTTCAAGAAGGGGGTTGGAAGGTCGTGTCAATACATGGGGACAAAGCACAACATGATCGTACAAAGGCACTATCATTATTCAAGAAGGGAAGTTGTCCTTTGATGATTGCTACTGATGTGGCCGCTCGGGGATTGGATATTCCAGATGTTGAAGTGGTGATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGGCGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCTGGGCAAAATGTGCCAGATGCCCTCTTGAAATTTGGCACACATGTCAAGAAAAAGGAGTCCAAGCTTTATGGGGCCCACTTCAAGGAAATTCCTGTTGATGCTCCGAAGTCTCAAAAAATAACATTTGACAATTCTGACGATGAAGACTAA	1587	0.4644	MGRKNGAVLVSEPVAEEVHNSPELESEKKKKKKKKNKDKHQNETSPKRKLNELDLENGTESNKKKKKHHKSNENVEETDADGNRDETATGGLVVVTGKNAGDAKYAAVKTFGDSELPENVLECCKGFERPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLRNRKSKAPKGRNPLCLMLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCRLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHQSQRNRVLVFVLYKWETSRVEKMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQNVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKITFDNSDDED	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4206g00053	528	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	261	269	IPR000629	-
	Gabi4206g00053	528	CDD	DEADc	125	316	-	-
	Gabi4206g00053	528	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	138	315	IPR014001	-
	Gabi4206g00053	528	Gene3D	-	57	318	IPR027417	-
	Gabi4206g00053	528	FunFam	ATP-dependent RNA helicase RhlB	318	495	-	-
	Gabi4206g00053	528	SMART	helicmild6	371	452	IPR001650	-
	Gabi4206g00053	528	CDD	SF2_C_DEAD	329	461	-	-
	Gabi4206g00053	528	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	340	491	IPR001650	-
	Gabi4206g00053	528	Pfam	DEAD/DEAH box helicase	132	299	IPR011545	GO:0003676\|GO:0005524
	Gabi4206g00053	528	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	465	IPR027417	-
	Gabi4206g00053	528	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	45	487	-	-
	Gabi4206g00053	528	SMART	ultradead3	126	332	IPR014001	-
	Gabi4206g00053	528	MobiDBLite	consensus disorder prediction	70	84	-	-
	Gabi4206g00053	528	Gene3D	-	319	494	IPR027417	-
	Gabi4206g00053	528	Coils	Coil	23	43	-	-
	Gabi4206g00053	528	MobiDBLite	consensus disorder prediction	39	62	-	-
	Gabi4206g00053	528	Pfam	Helicase conserved C-terminal domain	343	452	IPR001650	-
	Gabi4206g00053	528	MobiDBLite	consensus disorder prediction	1	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4206g00053	Gabi-Chr4206	546613	552364	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4206g00053	108	460	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.958	6.98e-55	188

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4206g00053	K14811		-	gmx:100305353	902.123