Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4206g00052 ATGGCAGATAGTCCAGTATCGTTTTTATTGGACAAGCTGACATCCTTACTTCAAGAAGAAGTGAATCTGCTAAGGGGGGTTCGTGAAGATGTTCAGTACATCAAAGATGAACTTGAACGCCACAAGGCCATCTTAAGGATGGCTGATGCTCTGGAAGACAAAGACCCTGAACTCAAAGCATGGGTTAAACGAGTGAGAGATATTGCTCATGACATGGAAGATGCTATAGATGAATTCAACCTTTGCCTTGTTGATCAACATGGCCAAGGCAACAATTCTTCTTTTCATAAGTTTGCTTCTTCCTTAAAGACCATGAAAGCTAGGCACCGGATTGCTACAGATATACAAGGTATCAAATCCAAAGTGGAAATTATCTCAAAGGGACGTCCCAGCATGTATGGGAGAGGTTCAAGTTCGAGTCAAAAGTTGTCACCAAGGCTTGAAAGCCAAGGAGATGCGCTTCTGCTAGAGGAAGCTGATCTAGTTGGTATTGACAAACCCAAGAAGCAGCTGAGTGATTTGCTTTTCAAAGATGAAGCAGGTCGTGCAGTAATTCCAATTTATGGAATGGGAGGGTTGGGGAAAACAACATTGGCAAAACAAGTCTATGATGATCCAAAAGTGAAGAAGCGTTTCAGGATTCATGCTTGGGTTAATGTTTCTCAATCTTTCAAGATAGAAGAGCTCCTGAAGGACCTTGTTCAACAGCTCCATAATGCGATTGGCAAACCAGCTCCTGAAGCAGTTGGACAAATGAAAAGTAACAAGCTAAAAGAAGTGATCAAGAACTTGCTTCAGCAAAGCAGGTACCTCATTGTGCTTGATGATGTATGGCATGTGAATGTTTGGGATTCTGTCAAACTTGCTTTGCCTAATAACAACCGTGGCAGCAGAGTAATGCTTACCACACGCAAGAAAGATGTTGCCTTGTCTTCATGTGCTGAATTCGGTAAGCAATTCAACCTTGAATTCTTACCTGAGCAAGAAGCTTGGTCTCTTTTCTGTAGGAAGACATTTCAGGGCAACTCATGTCCTCCTCATCTGGAAGAAGTATGCAGAAGTATCTTGAAACTGTGTGGGGGGTTGCCACTGGCAATTGTGGCAATCAGTGGTGCTTTGGCTACAAGAGACAGGACAAACATAGAAGAGTGGCAAATGGTATGCAGAAGTTTTGGTTCTGAAATTGAAGGCAATGACAAATTGGAGGATATGAAGAAAGTTCTTTCCTTGAGTTTCAATGAGTTACCTTACTATCTTAAATCCTGTTTGTTGTACCTAAGCATCTTCCCCGAATTTCATGCTATTGAGCATATGAGATTGATTCGCTTATGGATAGCTGAAGGGTTTGTCAAAGGAGAAGATGGAAAGACACTGGAGGAAGTTGCAGATAGTTACCTCAAGGAGCTCCTGGACAGAAGTTTGCTGCAAGTGACAACAAAAACCAGTGATGGCAGGATGAAGACTTGTCGCATGCATGATCTTCTAAGGGAGATTGTGACTTTGAAGTCAAAGGAACAAAACTTTGCAACAATAGCCAAAGAACAAGACATAATCTGGCCAGAGAGAGTTCGACGCCTATCAGTCATAAACACATTACAAAACGTGCAACAAAATAGGACAACATTCCAACTTCGTTCTCTGCTAGTGTTTGCCTTATCAGATTCACTTGACCATTTCTCTATACCTACATTATGTTCCACTGGTTTTAAGTTACTCACGGTGTTAGATTTGCAGGATGCACCTTTGGAGGTTTTTCCTGCTGAAATTGTCAATCTTTATCTTCTGCAGTATCTAAGTTTGAAGAACACAAAGGTGAAGAACATTCCAGGTTCCATTAAGAAGCTGCGGCACCTGGAGACATTGGATCTTAAACACTCCTGTGTCACTGAATTGCCAGCTGAAATTGTGGAGCTAACCAAATTACGCCATCTTCTGGTGTATCGTTATGAAGTTGAATCCTATGCTTATTTCCACTCAAAGTATGGCTTCAAGGTGGCTGCCCCAATAGGACATATGCAATCTTTGCAAAAGCTATGTTTTATAGAGGCAGACCAAGGAAGTAAAGCCTTGATGATTGAGCTTGGAAGACTCACTCAACTTAGGAGGCTGGGAATTAGAAAGATGAAGCAAGAAGATTGTGCTGCTTTGTGTTCATCCATTGAGAAGATGATCAATCTCAGATCACTGTCTATAACTGCAATTGAAGATGATGAGATAATTGATATACACAACATTTCAAGGCCTCCTCAGTATCTTCAGAGGTTATACTTGAGTGGACGTTTAGAGAAGCTGCCCCATTGGATAAGTTCTCTCAAGAACTTGGCCCGAGTGTTTCTTAAATGGAGCAGGTTAAAGGAGGATCCTCTGGTGCATCTTCAAGATTTGCCAAATCTAAGACATCTTGAGTTTCTTCAGGTGTATGTTGGTGAGACATTGCATTTCAAGGCAAAGGGGTTTCCAAGTCTGAAGGTGTTAGGCCTTGATGATTTAGATGGGCTGAAATCTATGATAATGGAGGAAGGAGCAATGCCTGGTCTTAAGAAGCTCATCATCCAGCGCTGTGATTCATTCAAGCAGGTACCATTAGGCATTGAACACCTAAGTAAACTAAAAAAAATTGAGTTTTTTGATATGCCTGAAGAATTGATTAAGACACTGCGTCCAAATGGAGGAGAAGAATACTGGAGAGTACAACATGTCCCAGTTGTTTATTCCACATATTGGAGGGATGGTGGTTGGGATGTCTACTCATTAGAGACTTCTGGGGAGAGAGAGAATGATTCCAGTCATAGTGCTGCAATGAGAAGTCTTGAACTTCGTACTCTCTGGAAGGTTTAA 2838 0.4161 MADSPVSFLLDKLTSLLQEEVNLLRGVREDVQYIKDELERHKAILRMADALEDKDPELKAWVKRVRDIAHDMEDAIDEFNLCLVDQHGQGNNSSFHKFASSLKTMKARHRIATDIQGIKSKVEIISKGRPSMYGRGSSSSQKLSPRLESQGDALLLEEADLVGIDKPKKQLSDLLFKDEAGRAVIPIYGMGGLGKTTLAKQVYDDPKVKKRFRIHAWVNVSQSFKIEELLKDLVQQLHNAIGKPAPEAVGQMKSNKLKEVIKNLLQQSRYLIVLDDVWHVNVWDSVKLALPNNNRGSRVMLTTRKKDVALSSCAEFGKQFNLEFLPEQEAWSLFCRKTFQGNSCPPHLEEVCRSILKLCGGLPLAIVAISGALATRDRTNIEEWQMVCRSFGSEIEGNDKLEDMKKVLSLSFNELPYYLKSCLLYLSIFPEFHAIEHMRLIRLWIAEGFVKGEDGKTLEEVADSYLKELLDRSLLQVTTKTSDGRMKTCRMHDLLREIVTLKSKEQNFATIAKEQDIIWPERVRRLSVINTLQNVQQNRTTFQLRSLLVFALSDSLDHFSIPTLCSTGFKLLTVLDLQDAPLEVFPAEIVNLYLLQYLSLKNTKVKNIPGSIKKLRHLETLDLKHSCVTELPAEIVELTKLRHLLVYRYEVESYAYFHSKYGFKVAAPIGHMQSLQKLCFIEADQGSKALMIELGRLTQLRRLGIRKMKQEDCAALCSSIEKMINLRSLSITAIEDDEIIDIHNISRPPQYLQRLYLSGRLEKLPHWISSLKNLARVFLKWSRLKEDPLVHLQDLPNLRHLEFLQVYVGETLHFKAKGFPSLKVLGLDDLDGLKSMIMEEGAMPGLKKLIIQRCDSFKQVPLGIEHLSKLKKIEFFDMPEELIKTLRPNGGEEYWRVQHVPVVYSTYWRDGGWDVYSLETSGERENDSSHSAAMRSLELRTLWKV 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4206g00052 945 Gene3D Ribonuclease Inhibitor 521 655 IPR032675 -
Gabi4206g00052 945 FunFam Probable disease resistance protein At1g63360 412 501 - -
Gabi4206g00052 945 Gene3D - 324 411 IPR042197 -
Gabi4206g00052 945 Gene3D - 153 315 IPR027417 -
Gabi4206g00052 945 Pfam NB-ARC domain 166 413 IPR002182 GO:0043531
Gabi4206g00052 945 PANTHER DISEASE RESISTANCE PROTEIN RP 33 857 IPR044974 GO:0006952
Gabi4206g00052 945 FunFam Probable disease resistance protein At1g61300 150 315 - -
Gabi4206g00052 945 PRINTS Disease resistance protein signature 184 199 - -
Gabi4206g00052 945 PRINTS Disease resistance protein signature 613 629 - -
Gabi4206g00052 945 PRINTS Disease resistance protein signature 264 278 - -
Gabi4206g00052 945 PRINTS Disease resistance protein signature 359 373 - -
Gabi4206g00052 945 Gene3D - 412 502 IPR036388 -
Gabi4206g00052 945 Gene3D - 5 112 - -
Gabi4206g00052 945 CDD RX-CC_like 2 127 IPR038005 -
Gabi4206g00052 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 426 IPR027417 -
Gabi4206g00052 945 Pfam Rx N-terminal domain 6 95 IPR041118 -
Gabi4206g00052 945 Gene3D Ribonuclease Inhibitor 665 888 IPR032675 -
Gabi4206g00052 945 SUPERFAMILY L domain-like 490 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4206g00052 Gabi-Chr4206 512215 515196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4206g00052 162 366 WRKY Transcription Factor Family AT5G45050 25.854 1.18e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4206g00052 K13457 - gmx:100305458 1578.92