Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4206g00017 ATGTATGGGAATTGTCAAGTTATGTCAACTATCGGAGGAAACGTAGTGGTAAACTCAGATAACATCTTCTCCTCGTCGATTCAGAACCCTAACTTCAACTTCTTGCCCACCATGCCTTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATGTTGCGAGGGAAGGAAGAGATAGAGAGTGGTTCTGGTAGTGAACAAGTTGAAGACAAGTCTGGGAATGAGCTAGAGAGTGAACAGCCTTCAAAGAAGAAACGTTATCACAGGCACACTGCTCGTCAGATCCAAGAGATGGAAGGATTGTTCAAGGAATGTCCACACCCGGACGATAAGCAGAGGCTGAAGCTGAGTCATGAACTTGGACTGAAACCGCGTCAGGTTAAGTTCTGGTTTCAGAATCGCCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAGAATGAGACTCTAAAGAATGAGAACTATCGGTTACAAGCTGCACTACGTAGTATTATCTGTCCCAATTGTGGTGGGCCATGCATAATGGGTGCTGATCTGGGCTTGGATGAACAACAGCTTAGACTTGAAAATGCTCGGTTACGAGAAGAGCTAGAACGAGTGTGTTGTATCACATCAAGATACGCTGGTCGTCCAATCCAAACAATGGGAGCAGCTCAAGCTCTTATGGCTCCTCCTTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGGGGATCCCATTGCTCCTTGCACTGAAATGATTCCTGTTCCCATGTTGCCTCCTGAAGCTTCACCATTTCCAGAGGGTGGTCTCTTAATGGAAGAAGAGAAGTCTCTGGCCTTGCAGCTTGCAGCTTCTGCCATGTCTGAGCTAGTGAAGATGTGTCAGTTAAACGAGCCACTTTGGGTCCGAAGCAGTGAGAGTGAGAGGGAAGTGCTTAATTTTGATGAGCATGCAAGGCTGTTTCCATGGCCTTTGAATCTCAAAAATCGAAGTGAACTAAGGACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAATAGCGTCACTCTTGTTGATGCTTTTCTTGATGCTCATAAATGGATGGAATTGTTTCCTACAATCGTTTCTAGAGCAAAAACTGTCCAAATTATATCTTCTGGTGCTTCTGGTCATGCGAGTGGATCTCTTCAGCTGATGTATGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGCAGGGAACCTGGGTCATTGTTGATTTTCCTATTGATAGCTTTCACGAAAATTTTCACCCTTCTTATCCCAGATACTGCAGAAGGTGTTCTGGCTGTGTGATTCAAGACATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCTGTAACTATGTCTACAGTGGAATGGCATTTGGAGCGCAGCGCTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTTGCGAGCCTCATGGCCAGAAACATATCGGATCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACGTTTAGCCTTAACATGAGTACCTCCGGTGGTCAATCATGGACAGCCATATCAGATAACCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGGGTTATTCTCAGTGCCGTTTCAACCACTTGGCTACCCTATTCTCATACCAGGGTCTTTGATCTCCTCAGGGACGAACGCCACAGATCTCAGATGGATGCTCTTTCCAATGGGAACTCATTAAATGAAGTGGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGTATAAATGTAGCTAGCAACTCATCCCAGAATGTAGAGCTAATGCTGCAAGAGAGTTGCACCGATCAATCTGGAAGCTTAGTAGTTTACGCCACCATTGATGTGGATTCCATTCAGCTAGCCATGAGTGGCGAGGATCCTTCTTGCATTTCCCTTCTTCCTCAAGGGTTCATGATAGTGCCAATGGTTTCAACCAATGGCAATTCATCTGAAGGTGTCACAGAACCACAAGCTACTACTACTACTAGTACTGTTAATTCAGGTTGCCTTCTCATCATGGGGTTGCAAGTTCTTGCAAGCACAATCCCTTCTGCAAAGCTCAACCTTTCAAGCGTGACAGCAATCAATAACCATCTCTGCAACACGCTGCACCAAATTGAAGCCACTCTTTGTAGCAGCACTAACAGCAGCTTTGTTGGGTCTTGCACTGAACCCACCACTAGTACACCACCCAAGCAGTGA 2385 0.4486 MYGNCQVMSTIGGNVVVNSDNIFSSSIQNPNFNFLPTMPFQPFPSMKEEDGMLRGKEEIESGSGSEQVEDKSGNELESEQPSKKKRYHRHTARQIQEMEGLFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKNENYRLQAALRSIICPNCGGPCIMGADLGLDEQQLRLENARLREELERVCCITSRYAGRPIQTMGAAQALMAPPSLDLDMNIYPRHFGDPIAPCTEMIPVPMLPPEASPFPEGGLLMEEEKSLALQLAASAMSELVKMCQLNEPLWVRSSESEREVLNFDEHARLFPWPLNLKNRSELRTEASRDTSVVIMNSVTLVDAFLDAHKWMELFPTIVSRAKTVQIISSGASGHASGSLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEQGTWVIVDFPIDSFHENFHPSYPRYCRRCSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDNPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTRVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCISLLPQGFMIVPMVSTNGNSSEGVTEPQATTTTSTVNSGCLLIMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEATLCSSTNSSFVGSCTEPTTSTPPKQ 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4206g00017 794 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Gabi4206g00017 794 Pfam START domain 285 509 IPR002913 GO:0008289
Gabi4206g00017 794 CDD homeodomain 84 142 IPR001356 GO:0003677
Gabi4206g00017 794 SUPERFAMILY Bet v1-like 527 768 - -
Gabi4206g00017 794 MobiDBLite consensus disorder prediction 56 84 - -
Gabi4206g00017 794 SUPERFAMILY Bet v1-like 276 511 - -
Gabi4206g00017 794 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Gabi4206g00017 794 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Gabi4206g00017 794 SMART START_1 284 509 IPR002913 GO:0008289
Gabi4206g00017 794 Coils Coil 140 160 - -
Gabi4206g00017 794 CDD START_ArGLABRA2_like 279 508 - -
Gabi4206g00017 794 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Gabi4206g00017 794 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Gabi4206g00017 794 Gene3D - 284 493 IPR023393 -
Gabi4206g00017 794 SMART HOX_1 82 145 IPR001356 GO:0003677
Gabi4206g00017 794 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 771 IPR042160 -
Gabi4206g00017 794 Gene3D - 69 152 - -
Gabi4206g00017 794 FunFam Homeobox-leucine zipper protein HDG1 70 157 - -
Gabi4206g00017 794 MobiDBLite consensus disorder prediction 56 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4206g00017 Gabi-Chr4206 139404 144265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4206g00017 8 774 Homeobox Transcription Factor Family AT5G46880 57.332 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi4206g00017 START 2e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4206g00017 - - gmx:100812829 1348.57