Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4206g00016 ATGTATGGGAATTGTCAAGTTATGTCAACTATCGGAGGAAACGTAAACCCTAACTTCAACTTCTTGCCCACCATGCCTTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATGTTGCGAGGGAAGGAAGAGATAGAGAGTGGTTCTGGTAGTGAACAAGTTGAAGACAAGTCTGGGAATGAGCTAGAGAGTGAACAGCCTTCAAAGAAGAAACGTTATCACAGGCACACTGCTCGTCAGATCCAAGAGATGGAAGGATTGTTCAAGGAATGTCCACACCCGGACGATAAGCAGAGGCTGAAGCTGAGTCATGAACTTGGACTGAAACCGCGTCAGGTTAAGTTCTGGTTTCAGAATCGCCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAGAATGAGACTCTAAAGAATGAGAACTATCGGTTACAAGCTGCACTACGTAGTATTATCTGTCCCAATTGTGGTGGGCCATGCATAATGGGTGCTGATCTGGGCTTGGATGAACAACAGCTTAGACTTGAAAATGCTCGGTTACGAGAAGAGCTAGAACGAGTGTGTTGTATCACATCAAGATACGCTGGTCGTCCAATCCAAACAATGGGAGCAGCTCAAGCTCTTATGGCTCCTCCTTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGGGGATCCCATTGCTCCTTGCACTGAAATGATTCCTGTTCCCATGTTGCCTCCTGAAGCTTCACCATTTCCAGAGGGTGGTCTCTTAATGGAAGAAGAGAAGTCTCTGGCCTTGCAGCTTGCAGCTTCTGCCATGTCTGAGCTAGTGAAGATGTGTCAGTTAAACGAGCCACTTTGGGTCCGAAGCAGTGAGAGTGAGAGGGAAGTGCTTAATTTTGATGAGCATGCAAGGCTGTTTCCATGGCCTTTGAATCTCAAAAATCGAAGTGAACTAAGGACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAATAGCGTCACTCTTGTTGATGCTTTTCTTGATGCTCATAAATGGATGGAATTGTTTCCTACAATCGTTTCTAGAGCAAAAACTGTCCAAATTATATCTTCTGGTGCTTCTGGTCATGCGAGTGGATCTCTTCAGCTGATGTATGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGCAGGGAACCTGGGTCATTGTTGATTTTCCTATTGATAGCTTTCACGAAAATTTTCACCCTTCTTATCCCAGATACTGCAGAAGGTGTTCTGGCTGTGTGATTCAAGACATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCTGTAACTATGTCTACAGTGGAATGGCATTTGGAGCGCAGCGCTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTTGCGAGCCTCATGGCCAGAAACATATCGGATCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACGTTTAGCCTTAACATGAGTACCTCCGGTGGTCAATCATGGACAGCCATATCAGATAACCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGGGTTATTCTCAGTGCCGTTTCAACCACTTGGCTACCCTATTCTCATACCAGGGTCTTTGATCTCCTCAGGGACGAACGCCACAGATCTCAGATGGATGCTCTTTCCAATGGGAACTCATTAAATGAAGTGGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGTATAAATGTAGCTAGCAACTCATCCCAGAATGTAGAGCTAATGCTGCAAGAGAGTTGCACCGATCAATCTGGAAGCTTAGTAGTTTACGCCACCATTGATGTGGATTCCATTCAGCTAGCCATGAGTGGCGAGGATCCTTCTTGCATTTCCCTTCTTCCTCAAGGGTTCATGATAGTGCCAATGGTTTCAACCAATGGCAATTCATCTGAAGGTGTCACAGAACCACAAGCTACTACTACTACTAGTACTGTTAATTCAGGTTGCCTTCTCATCATGGGGTTGCAAGTTCTTGCAAGCACAATCCCTTCTGCAAAGCTCAACCTTTCAAGCGTGACAGCAATCAATAACCATCTCTGCAACACGCTGCACCAAATTGAAGCCACTCTTTGTAGCAGCACTAACAGCAGCTTTGTTGGGTCTTGCACTGAACCCACCACTAGTACACCACCCAAGCAGTGA 2346 0.4488 MYGNCQVMSTIGGNVNPNFNFLPTMPFQPFPSMKEEDGMLRGKEEIESGSGSEQVEDKSGNELESEQPSKKKRYHRHTARQIQEMEGLFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENETLKNENYRLQAALRSIICPNCGGPCIMGADLGLDEQQLRLENARLREELERVCCITSRYAGRPIQTMGAAQALMAPPSLDLDMNIYPRHFGDPIAPCTEMIPVPMLPPEASPFPEGGLLMEEEKSLALQLAASAMSELVKMCQLNEPLWVRSSESEREVLNFDEHARLFPWPLNLKNRSELRTEASRDTSVVIMNSVTLVDAFLDAHKWMELFPTIVSRAKTVQIISSGASGHASGSLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEQGTWVIVDFPIDSFHENFHPSYPRYCRRCSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSLNMSTSGGQSWTAISDNPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTRVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCISLLPQGFMIVPMVSTNGNSSEGVTEPQATTTTSTVNSGCLLIMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEATLCSSTNSSFVGSCTEPTTSTPPKQ 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4206g00016 781 SUPERFAMILY Bet v1-like 514 755 - -
Gabi4206g00016 781 Gene3D - 56 139 - -
Gabi4206g00016 781 SMART START_1 271 496 IPR002913 GO:0008289
Gabi4206g00016 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 69 758 IPR042160 -
Gabi4206g00016 781 Pfam START domain 272 496 IPR002913 GO:0008289
Gabi4206g00016 781 SUPERFAMILY Bet v1-like 263 498 - -
Gabi4206g00016 781 Pfam Homeodomain 71 126 IPR001356 GO:0003677
Gabi4206g00016 781 SMART HOX_1 69 132 IPR001356 GO:0003677
Gabi4206g00016 781 SUPERFAMILY Homeodomain-like 62 129 IPR009057 -
Gabi4206g00016 781 CDD homeodomain 71 129 IPR001356 GO:0003677
Gabi4206g00016 781 MobiDBLite consensus disorder prediction 40 79 - -
Gabi4206g00016 781 Coils Coil 127 147 - -
Gabi4206g00016 781 CDD START_ArGLABRA2_like 266 495 - -
Gabi4206g00016 781 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Gabi4206g00016 781 FunFam Homeobox-leucine zipper protein HDG1 57 144 - -
Gabi4206g00016 781 MobiDBLite consensus disorder prediction 40 71 - -
Gabi4206g00016 781 Gene3D - 271 480 IPR023393 -
Gabi4206g00016 781 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Gabi4206g00016 781 ProSiteProfiles START domain profile. 262 499 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4206g00016 Gabi-Chr4206 139404 144265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4206g00016 16 772 Homeobox Transcription Factor Family AT5G46880 58.076 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi4206g00016 START 2e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4206g00016 - - gmx:100812829 1320.84