Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4206g00013 ATGGTGGAAAGAAGAGTGTGTTTATCGAAGGAAGCTAGGGATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTGATCGAGCAAAATCCATCGCTGCTGCAGAGACAAGTATTGCAAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCGGCATCATGTGGCATGAGATTGCATGGTAACGCAGATGCCTTTTCCAAGCGGAAGGTAGATAAGTTTGACACAAGTGATCTGAAATGGACTGATAAAATTCCTGAGTGTCCTGTTTATTCTCCAACAAAGGAGGAATTCGAGGATCCTTTGGTTTATTTGCAAAAGATAGCCCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTCTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACGAGGGTGCAGCCCCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAACCTATACTTTTCGTGATTATGAGAAAATGGCAAACAAGATTTTTGCCAGAAGATATTGCAGCACTGGAAGTCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGCATGAAATTGGCTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCGCTGATCAGCTTGGGAATAGCAAATGGAATTTAAAGAAACTTTCGCGGTTGTCCAAATCAATTTTACGGCTCTTGGAAACATCAATTCCGGGAGTAACGGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCATGGCACGTGGAGGATCATTACTTGTACAGCATTAACTATCATCACTGTGGGGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGATTTTGAAAGAGTTGTAAGAGAACACGTGTATACAAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTACTGGGGAAAACAACACTATTTCCTCCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCCGGGGAGTTTATAATAACCTTCCCTAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGCCGGAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGTTTCTTCATACATGCTTGGAACTTGAAGATTCAGACTTTCCCTCTTCAGACTTGTTTTCTCATAATAGCATTAAGATTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCTCGATGGATCCTTATGAAATCTGCAGCATGTATAAGTATCTCTTCTCATTCCCATGGCACGATTCTCTGTAGCCTCTGCAAACGTGACTGTTATATAGCATATGTTGACTGCAATTGTCACAGTCATCCTGTATGCCTACGCCATGATATTGAGTCTCTTGACCTCATATGTGGGAGCAAACACACTCTTTATTTAAGGGAGGATATTACGGATATGGAAGCTGCAGCAAAGATGTTTGAACAGGAAGATGGGATATTGGATGAGATACGCAAGCAAACAAAAAGTGACCAAAACATGTATTCTTATCCTTTGCCAAATATGTTTCAGAGAGCTGAAGCAAATGGATACTCACCTTACTGTGAGCTAAAACTTGATTCTGTTATTGAATTTTATACAACTCCAGTGCTATCAGCAAATAATCAAGAGTGTGGTACACAAAGTCAATTCGTTTTCAGGCATTGCTCTGAAAATTATAAACCAGAAGTGTCTGAGGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACCTCTTGAGAGCTCCACTTCTTCCAAAAATGCCGAGGGGAATACCAACTTCAATTTAGGCATTATTGATTTTGAAGAGTTTGGTGAAAGAACATCGCATAGTGTTTGTGAATCTTCACTATCCCCTGCTCTGTATCACGAAAGCTCGGCTAAACCGCAGGGTGATCTTCATAAATTTGACACGAAGCCCATTGTGGATAGCGAGAGTGATGATTCTGAATCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATTTGAATGCTATGTCTTCCAAGCATTCGGAGCAGCAGGGACTTCAACGATTGAAGAAAGTCCATCCTGAAGAAAAAAGTGGGCAGCCAATGGATTTCAGCAGAACCAACGGATCAAGTTACAAATACAGTCATCATGTTAATCGTAAAATTGGTGGCGAAATTTCCTCGAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCTGTAAGATACAAGAAGTTAGGCAACGAGGAAATGAGCAGGCAACGAGATCACCACAGGAGAGATAGGATGCATCAAACTTTTAGGGAACAACCTTCCTTTGAGATTGGGCGGAAGCGCCTTAAAGTCCGAGGCCCATCGTTTTTGGGCTTGGAGAGCAGCAGCAGATTGAATTGA 2574 0.4176 MVERRVCLSKEARDGLEFLKRKRLDRAKSIAAAETSIANMMNRSGGDALRASASCGMRLHGNADAFSKRKVDKFDTSDLKWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRTYTFRDYEKMANKIFARRYCSTGSLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPADQLGNSKWNLKKLSRLSKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMFLHTCLELEDSDFPSSDLFSHNSIKISFVNLMRFQHCARWILMKSAACISISSHSHGTILCSLCKRDCYIAYVDCNCHSHPVCLRHDIESLDLICGSKHTLYLREDITDMEAAAKMFEQEDGILDEIRKQTKSDQNMYSYPLPNMFQRAEANGYSPYCELKLDSVIEFYTTPVLSANNQECGTQSQFVFRHCSENYKPEVSEVSFSAASTLCSLSEPLESSTSSKNAEGNTNFNLGIIDFEEFGERTSHSVCESSLSPALYHESSAKPQGDLHKFDTKPIVDSESDDSESEMFRVKRPSSLKAERRNLNAMSSKHSEQQGLQRLKKVHPEEKSGQPMDFSRTNGSSYKYSHHVNRKIGGEISSRDRFARGNGIPISVRYKKLGNEEMSRQRDHHRRDRMHQTFREQPSFEIGRKRLKVRGPSFLGLESSSRLN 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4206g00013 857 FunFam Lysine-specific demethylase isoform A 83 432 - -
Gabi4206g00013 857 MobiDBLite consensus disorder prediction 803 838 - -
Gabi4206g00013 857 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Gabi4206g00013 857 MobiDBLite consensus disorder prediction 704 771 - -
Gabi4206g00013 857 Gene3D Cupin 81 410 - -
Gabi4206g00013 857 SMART cupin_9 232 405 IPR003347 -
Gabi4206g00013 857 Pfam jmjN domain 89 121 IPR003349 -
Gabi4206g00013 857 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 755 - -
Gabi4206g00013 857 SMART JmjN_1 87 128 IPR003349 -
Gabi4206g00013 857 MobiDBLite consensus disorder prediction 743 759 - -
Gabi4206g00013 857 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Gabi4206g00013 857 ProSiteProfiles JmjC domain profile. 232 405 IPR003347 -
Gabi4206g00013 857 MobiDBLite consensus disorder prediction 806 838 - -
Gabi4206g00013 857 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Gabi4206g00013 857 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Gabi4206g00013 857 MobiDBLite consensus disorder prediction 704 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4206g00013 Gabi-Chr4206 116083 122701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4206g00013 56 544 JUMONJI Transcription Factor Family AT2G34880 31.541 4.66e-64 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4206g00013 JmjC 4.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4206g00013 - - gmx:100798611 1435.24