Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4203g00006 ATGGGAGTGGACTACTACAAGATTCTTCAGGTAGATAGAAGCGTCAAAGATGATGATCTCAAGAAAGCATATCGAAAGCTTGCAATGAAGTGGCATCCTGATAAGAACCCTAACAACAAAAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCATATGATGTTTTGAGTGATCCACAGAAGCGAGCAGTGTATGATCAGTATGGTGAGGAGGGGTTGAATGGACAGGTGCCGCCGCCGGATGCCGGCGGTTTCCCTGGCAGCAGTGACGGCGGGCCAACAACGTTCCGGTTTAACCCAAGAAGTGCTGATGATATATTTTCTGAGATTTTTGGGTATTCAAGCCCCTTTGGTGGAATGGGGGACATGGGTGGTCGTGTTGGTGCCTCTGGATTTCCCATGGGTGGCATGTTTAGTGAAGATATTTTTGCTCAACTTAGGAGTGGAGCTGGAGAGGGTTCTGGCCATGTGCCAAGGAAAGGTGCAGCCATTGAGAGAACATTGCATTGTAGTTTGGAGGATTTGTATAATGGGACTGCCAAAAAAATGAAGATTTCTAGGGGTGTTAGTGATGCCAGTGGGAGGCCCACCACAGTAGAGGAGATCCTAACTATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAACAGAGAGGAGTTATCCCAGCAGACCTTGTCTTTGTTATTGATGAGAAGCCTCATAGTGTCTTCAAGAGGGATGGCAATGATCTTGTTGTCACTCAAAAGATATCTCTTGTAGAAGCCCTGACAGGTTACACAGCGCAGCTGACAACGCTCGATGGGCGTAATCTTACAATCCCCATTAACTCCGTCGTTAGTCCAACATATGAAGAAGTTGTTAAAGGAGAGGGTATGCCTATTCCCAAAGAACCTTCAAAGAAGGGAAACTTGAGAATCAAGTTCAATATTAAGTTTCCCTCCAGGCTTACATCAGAACAGAAAAGTGGCATTAAGCGATTATTGACATCTCCATAA 1026 0.4483 MGVDYYKILQVDRSVKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGQVPPPDAGGFPGSSDGGPTTFRFNPRSADDIFSEIFGYSSPFGGMGDMGGRVGASGFPMGGMFSEDIFAQLRSGAGEGSGHVPRKGAAIERTLHCSLEDLYNGTAKKMKISRGVSDASGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFVIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLTIPINSVVSPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4203g00006 341 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4203g00006 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 158 251 IPR008971 GO:0006457|GO:0051082
Gabi4203g00006 341 Gene3D - 163 242 - -
Gabi4203g00006 341 FunFam DnaJ subfamily B member 13 3 122 - -
Gabi4203g00006 341 FunFam DnaJ subfamily B member 13 244 324 - -
Gabi4203g00006 341 CDD DnaJ 4 59 IPR001623 -
Gabi4203g00006 341 Gene3D - 244 324 - -
Gabi4203g00006 341 SMART dnaj_3 3 62 IPR001623 -
Gabi4203g00006 341 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Gabi4203g00006 341 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4203g00006 341 FunFam Dnaj homolog subfamily b member 161 242 - -
Gabi4203g00006 341 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Gabi4203g00006 341 CDD DnaJ_C 165 326 - -
Gabi4203g00006 341 SUPERFAMILY HSP40/DnaJ peptide-binding domain 246 332 IPR008971 GO:0006457|GO:0051082
Gabi4203g00006 341 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4203g00006 341 Pfam DnaJ C terminal domain 165 323 IPR002939 -
Gabi4203g00006 341 Gene3D DnaJ domain 3 122 IPR036869 -
Gabi4203g00006 341 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4203g00006 341 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4203g00006 341 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4203g00006 341 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4203g00006 341 MobiDBLite consensus disorder prediction 71 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4203g00006 Gabi-Chr4203 29165 32381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4203g00006 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 3.00e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4203g00006 K09510 - gmx:100818358 589.341