Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4203g00003 ATGGGAGTGGACTACTACAAGATTCTTCAGGTAGATAGAAGCGTCAAAGATGATGATCTCAAGAAAGCATATCGAAAGCTTGCAATGAAGTGGCATCCTGATAAGAACCCTAACAACAAAAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCCGAAGCATATGATGTTTTGAGTGATCCACAGAAGCGAGCAGTGTATGATCAGTATGGTGAGGAGGGGTTGAATGGACAGGTGCCGCCGCCGGATGCCGGCGGTTTCCCTGGCAGCAGTGACGGCGGGCCAACAACGTTCCGGTTTAACCCAAGAAGTGCTGATGATATATTTTCTGAGATTTTTGGGTATTCAAGCCCCTTTGGTGGAATGGGGGACATGGGTGGTCGTGTTGGTGCCTCTGGATTTAGGAGGCCCACCACAGTAGAGGAGATCCTAACTATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAACAGAGAGGAATATCTCTTGTAGAAGCCCTGACAGGTTACACAGCGCAGCTGACAACGCTCGATGGGCGTAATCTTACAATCCCCATTAACTCCGTCGTTAGTCCAACATATGAAGAAGTTGTTAAAGGAGAGGGTATGCCTATTCCCAAAGAACCTTCAAAGAAGGGAAACTTGAGAATCAAGTTCAATATTAAGTTTCCCTCCAGGCTTACATCAGAACAGAAAAGTGGCATTAAGCGATTATTGACATCTCCATAA 753 0.4502 MGVDYYKILQVDRSVKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGQVPPPDAGGFPGSSDGGPTTFRFNPRSADDIFSEIFGYSSPFGGMGDMGGRVGASGFRRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGISLVEALTGYTAQLTTLDGRNLTIPINSVVSPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4203g00003 250 SUPERFAMILY HSP40/DnaJ peptide-binding domain 136 166 IPR008971 GO:0006457|GO:0051082
Gabi4203g00003 250 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi4203g00003 250 Gene3D DnaJ domain 3 122 IPR036869 -
Gabi4203g00003 250 Gene3D - 169 233 - -
Gabi4203g00003 250 SUPERFAMILY HSP40/DnaJ peptide-binding domain 168 241 IPR008971 GO:0006457|GO:0051082
Gabi4203g00003 250 CDD DnaJ 4 59 IPR001623 -
Gabi4203g00003 250 SMART dnaj_3 3 62 IPR001623 -
Gabi4203g00003 250 Gene3D - 125 168 - -
Gabi4203g00003 250 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi4203g00003 250 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi4203g00003 250 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi4203g00003 250 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi4203g00003 250 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gabi4203g00003 250 MobiDBLite consensus disorder prediction 71 98 - -
Gabi4203g00003 250 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 135 167 - -
Gabi4203g00003 250 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Gabi4203g00003 250 FunFam DnaJ subfamily B member 13 3 122 - -
Gabi4203g00003 250 FunFam DnaJ subfamily B member 13 164 233 - -
Gabi4203g00003 250 Pfam DnaJ domain 4 67 IPR001623 -
Gabi4203g00003 250 Pfam DnaJ C terminal domain 169 232 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4203g00003 Gabi-Chr4203 29165 32409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4203g00003 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 9.57e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4203g00003 K09510 - mnt:21391625 377.096