Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4200g00001 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCATGTCTGAAAGGGGACCAATGTGATTTTTCTCATGAGAGAAAGGATACTCCAGTTGATATTTGCACGTATTATAAAAAAGGATTATGTGCTTATGGTAGTCGATGCAGATATAAGCATATCAAAGCTTCTCAAGATTCATCTTTGGCATCATCTTCATCAAATGGACGCCAATCTCTGGTTTCAGATTCTGTTGTGGCTCCTATTATTAAAGGAACATCTAGTTGGGTTCCAAAGGCTACAAAGTTGTCTTCATCTGACAAGCGTGCAAGGAGTTTACAAAATAAGCATCAGGACTCTTCGGGGAATGGTGGTGTTGGTGAATCCAGTACTAGTAGCAATATACCATCTAAACATTTATTTTGCGCTTTTGCTGCTGCTAAGTGTCCCTTAGGAGATAAATGTTCTCGTGTTCATGGAAATCAATGTTTATACTGTAGAAAATACTGCTTGCATCCTACTGATCGAAAGGAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAAAGATAGTCAAGAAATAGAATGCAATGTTTGTCTGGAGCGTGTTCTTTCCAAACCTAAACCATCTGAATGTAAGTTTGGGCTGCTTCCGGAATGCGATCATGCCTTCTGTTTATCCTGCATCCGCAATTGGCGTAATAGTGCCCCAACCGCTGGAATGGACGTCAATAATAATGCTAGTACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCGTATTTTGTGATTCCAAGTGGTATTTGGTATTCTACAAAGGAAGAAAAACAGGAAATTACTGACAACTACAAGGCAAATTGCAAGTTGATTGATTGCAAGCATTTTAACTTTGGAAATGGGAACTGTCCATTTGGGACTACTTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACATGTGGATACATGACAGGCCACCTCCACAACGTAGGCCAAACAATTTTGATATGTATGACATGTTGGATATGCTCAGTGATTTTGATTTATCGACTGGAGAATTTTATTCCATTATGCGGGACTCAGAGTTTTTTGATGATATGGATCCATTGGAGATTATGACTATATCAGATACGCTGGCTAGTGGATCAGGTCCTTGTTTTGGTCCTTTTGATTCTGATGATGAGGACTTGGATATTTTTCAGATAGCTGCTTTGTCCGAGGCACTGGATTCTGGTGTGGATGATTTTGGCCCTGAAGATTTTGAAAATGAAGAATTGAATCCTATGGAGGCAGCTTTGTTTTCAATGATGATGCATTCTGATGTGGAAGAAGAAGACTCATGA 1344 0.3988 MSNRVCKFYARGACLKGDQCDFSHERKDTPVDICTYYKKGLCAYGSRCRYKHIKASQDSSLASSSSNGRQSLVSDSVVAPIIKGTSSWVPKATKLSSSDKRARSLQNKHQDSSGNGGVGESSTSSNIPSKHLFCAFAAAKCPLGDKCSRVHGNQCLYCRKYCLHPTDRKEKENHLRTCEKKEKYLQALKDSQEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTAGMDVNNNASTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEITDNYKANCKLIDCKHFNFGNGNCPFGTTCFYKHTVKPGSYMWIHDRPPPQRRPNNFDMYDMLDMLSDFDLSTGEFYSIMRDSEFFDDMDPLEIMTISDTLASGSGPCFGPFDSDDEDLDIFQIAALSEALDSGVDDFGPEDFENEELNPMEAALFSMMMHSDVEEEDS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4200g00001 447 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Gabi4200g00001 447 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Gabi4200g00001 447 MobiDBLite consensus disorder prediction 93 124 - -
Gabi4200g00001 447 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Gabi4200g00001 447 SUPERFAMILY RING/U-box 185 263 - -
Gabi4200g00001 447 SMART ring_2 196 256 IPR001841 -
Gabi4200g00001 447 PANTHER MAKORIN-RELATED 1 335 IPR045072 GO:0000209|GO:0061630
Gabi4200g00001 447 Pfam Zinc finger, C3HC4 type (RING finger) 196 256 IPR018957 GO:0046872
Gabi4200g00001 447 ProSiteProfiles Zinc finger C3H1-type profile. 286 315 IPR000571 GO:0046872
Gabi4200g00001 447 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Gabi4200g00001 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 288 IPR013083 -
Gabi4200g00001 447 Gene3D - 1 67 - -
Gabi4200g00001 447 CDD RING-HC_MKRN 194 257 - -
Gabi4200g00001 447 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Gabi4200g00001 447 MobiDBLite consensus disorder prediction 108 124 - -
Gabi4200g00001 447 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Gabi4200g00001 447 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Gabi4200g00001 447 SMART c3hfinal6 128 153 IPR000571 GO:0046872
Gabi4200g00001 447 SMART c3hfinal6 286 314 IPR000571 GO:0046872
Gabi4200g00001 447 Pfam RNA-binding, Nab2-type zinc finger 291 312 - -
Gabi4200g00001 447 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Gabi4200g00001 447 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Gabi4200g00001 447 ProSiteProfiles Zinc finger RING-type profile. 196 257 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4200g00001 Gabi-Chr4200 43421 56100 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4200g00001 zf-C3HC4 3.9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4200g00001 K15687 - gmx:100788886 744.962