Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi41g00001 ATGTCTCAGAGTAACTGGGAAGCTGATAAAATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCCGAAGGGAAAGTGTCCTCGGATCCTGTTGCTATTGATGCCCCGGGAGGATTTCTGTTCGAGTGGTGGTCAGTTTTTTGGGACATATTTATTGCCAGGACAAATGAGAAGCACTCAGAGGTTGCTGCATCTTACATTGAGACACAGTTAATTAAGGCCAGGGAGCAACAACAGCAGTCACAACAGCAACAACAACAGCAGCCACAACCTCAGCAGTCACAGAATCAACAGCAGCAGCAGCAACAACAACAACACATGCAGATGCAACAACTCCTATTACAGAGGCATGCTCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACAACAGCAATCACATCCACATCATCAGCAGCCACCACCACAACAACAGCAGAGTAGAGATAGGGCTCATCTCTTAAATGGTGGTACAAATGGGTTAGTTGGAAACCCTAGTACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGAAGATGCAGCGATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCTTCAATATTGAAGTCATCTGCGGCTACTGGCCAGCCTTCAGGACAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGCTTGTAGTCAGCAATTACCAGGGTCTACTACGGATATAAAGAGTGAAATTTATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTAATAGCAATTCCTGGGTCGAATCAAGGTAGGAACAATTTGACTCTGAAAGGGTGGCCACTCACTGGGTTGGATCAACTACGTTCTGGTCTACTCCCGCAACAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCATCAACTTCCAATGCTGTCACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAATTTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAATAATAGGAATATGGGCCCAAGTAAGGATGGTCTTTCAAATCCTGTTGGTGATGTAGTATCAAGTGTTGGATCACCTCTTCAAGCGAGTGGTCCTCCTTTTCCTCGTGGTGATACCGATATGCTAATGAAGTTGAAACTGGCTCAGTTTCATCAACATCAACAACAGCAGAACACCAATCCACAGCAGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTTGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAATCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCAGCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACTGCAGGCCCGTCTCCAAGTTCAGCACCCTCAACTCCCTCAACGCATACGCCTGGCGATGTGATATCGGTGCCTGCTCTACCTCATAGTGGTAGTTCTTCAAAGCATCTTATGACGTTTGGCACTGATGGCGCTGGAGCTCTTACTTCACCTTCAAATCAGTTGTGGCATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATGCAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGACCCGGGTACGGGGAAGATGATTGGAGTGGGCCGTGAGTCACGGGGTTTGTTCTACCTTGATGTGCCGAGTCCTTCAGTTGCTTGTTCTCTCACAGAATCTCCACAGCTCATCCACAG 1922 0.461 MSQSNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQSQQQQQQQPQPQQSQNQQQQQQQQQHMQMQQLLLQRHAQQQQQQQQQQQQQQQSHPHHQQPPPQQQQSRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQACSQQLPGSTTDIKSEIYPVLNPRAAGPEGSLIAIPGSNQGRNNLTLKGWPLTGLDQLRSGLLPQQKPFIQAPQPFHQLPMLSPQHQQQLMLAQQNLASPSASDDSRRLRMLLNNRNMGPSKDGLSNPVGDVVSSVGSPLQASGPPFPRGDTDMLMKLKLAQFHQHQQQQNTNPQQQQLQQHALSNQQSQSSNHNMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQTGRKRKQPVSASGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISVPALPHSGSSSKHLMTFGTDGAGALTSPSNQLWHDKDLELQADVDRFVEDGSLDDNVESFLSHDDADPRDTVGRCMDDPGTGKMIGVGRESRGLFYLDVPSPSVACSLTESPQLIH 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi41g00001 640 Coils Coil 121 141 - -
Gabi41g00001 640 SMART Lish 8 40 IPR006594 GO:0005515
Gabi41g00001 640 MobiDBLite consensus disorder prediction 92 179 - -
Gabi41g00001 640 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gabi41g00001 640 MobiDBLite consensus disorder prediction 460 520 - -
Gabi41g00001 640 MobiDBLite consensus disorder prediction 365 546 - -
Gabi41g00001 640 Pfam LisH 10 36 IPR006594 GO:0005515
Gabi41g00001 640 PANTHER TRANSCRIPTION ACTIVATOR MSS11 3 601 - -
Gabi41g00001 640 MobiDBLite consensus disorder prediction 412 449 - -
Gabi41g00001 640 MobiDBLite consensus disorder prediction 528 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi41g00001 Gabi-Chr41 320 17833 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gabi41g00001 LisH 9.2e-07 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi41g00001 - - gmx:100779972 687.952