Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4198g00001 ATGGGAAACAGAAAGGAAGAAGAGAAGAACGAGAAAATTATAAGGGGTCTCATGAAACTTCCGCCAAATCGAAGATGTATAAACTGTAACAGTGTGGGACCTCAATATGTATGTACAAGTTTTTGGACCTTCATTTGCATTACATGCAGCGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGTCAAAGTTCACTTCAGAAGAAGTTGATGCTCTTCAAAATGGTGGTAATCAGCGTGCAAGGGAACTATATTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGCAAAGTTGATAAAATAAGGGAGTTTATAAGGAATGTATATGTGGATAGAAAATATGCTGGTGCAAAGTCTTCCGAAAAGCCTCCAAGAGATGCACAGAGCCCTAGAATTCATGAAGAAGAGATAAGGCGAGCCAGTTCTTATCATTCATATTCTCAAAGTCCCCCATATGATAACCAATATGAGGATCGACGGTATGGAAAACAAGCAGCTGCACTTACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGGAAGATGTCTAGTATTATCTGTAGTCCTGGTCGCTTCAGCGATCATTCATATGATGAACGATTTGCAAATGAGGGATCTGAGCAATTTAAATCCAATGTTCAGTCTCCTAAGCTTCAGAAGGACATTGGGTTTAGCAGTCCATCCTATCAGCGTTCTGGTTCCAGTTCAAGTGAAGATGTATGGTCTCAAGCAAGAAATACATCTCAGGAAACTAATGGCAATGCCAAGAAAGATGCAGATGGAATTCATCCTCCACAGAAAACATCATTGCATTCTACAGACAGCAACTTTTCATCCTTAAGATCCTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTGTCCAAGCTTCAGGATCCCTTCAGAATAAAGCGTTAGGCATTCCACGACCATCTGGTCCTACAAGATCCGTTAGCATGGACCTTTCCAAGCCACCAATGGCATCAGCTTCACCTATTGATCTTTTTCATTTACCAGCAGCACCATCTCAATCTCCGTCGGTGGATCTGTTTCAATCATCTGTTTTATCTGCAACTCCATCTTTTAGTGAGAATCAACTTGTGCAAACATCCCCAACCACATCTATTGACTTCTCTGTGGATCTTTCTCTGCTGCCTTCTAGTGCAACCTCAGATGAGAAGTCACTGGAGTTATCTGTCCCTAAAAATGAAGGATGGGCAACATTTGATATGCCTCAGTGCACATCATCTACTGCACAAGTGGAAATTCCAGCTGCAGTACCTTCAAGTGCTGAATCTCTGCAGGAAAGATTTGTTCCTTTTTCAACCTTAAATGCAAGCATGCAATGGCCATCTTTTGAAAGTTCTAGTGTCGGTGTACCTTCTTCAGTTTCATCTAATTTATGGCATGATGGTGTGTGGAATGGAGAAGATCAAGTTTCTGTTATGGCAACAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTGCCCATCTTCCTGTGGATGCCCTTGGTCAAGGGTTACAGTTGAACAATTTTCCATCAGCTTCTGAGGGATCCAATAAAGTTGGAGTGCAAGGCATGGCCCCTATTAGTGGATTTGATAGTCACGACATCGCATCACATATCAGTGGCTCACTGTATCCTCCACCCATGCTTACTCAAATGGGAGATAATCAACCCAATGGAATCAATTATAAATCAACAAATCCATTTGATTATCCATATGATTCTGATGTAGATCGCAATGATATGTTCCTTGATATGAGCTCTTTGCAAGCTGCTCTGCCAGATGCCCTATTGCCAGCCACCTTCCATAGTGGTATAGCTGAACCCTGGGTCCCTCAAAATACGGTGTCCCCCTATATTTCCTCTGCAGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAAGTTCTCAAATACAGAACATCCAGACACAGGAACCAGTTGCTTCGTTTGGTGGAAATCCTTTTGCATAG 2016 0.4221 MGNRKEEEKNEKIIRGLMKLPPNRRCINCNSVGPQYVCTSFWTFICITCSGIHREFTHRVKSVSMSKFTSEEVDALQNGGNQRARELYLKNWDFQRQRLPDSSKVDKIREFIRNVYVDRKYAGAKSSEKPPRDAQSPRIHEEEIRRASSYHSYSQSPPYDNQYEDRRYGKQAAALTRKPGSDKVRYEGKMSSIICSPGRFSDHSYDERFANEGSEQFKSNVQSPKLQKDIGFSSPSYQRSGSSSSEDVWSQARNTSQETNGNAKKDADGIHPPQKTSLHSTDSNFSSLRSYSSGGLVDFFSEPVQASGSLQNKALGIPRPSGPTRSVSMDLSKPPMASASPIDLFHLPAAPSQSPSVDLFQSSVLSATPSFSENQLVQTSPTTSIDFSVDLSLLPSSATSDEKSLELSVPKNEGWATFDMPQCTSSTAQVEIPAAVPSSAESLQERFVPFSTLNASMQWPSFESSSVGVPSSVSSNLWHDGVWNGEDQVSVMATNTQPWNAFEDSGAHLPVDALGQGLQLNNFPSASEGSNKVGVQGMAPISGFDSHDIASHISGSLYPPPMLTQMGDNQPNGINYKSTNPFDYPYDSDVDRNDMFLDMSSLQAALPDALLPATFHSGIAEPWVPQNTVSPYISSAGEGGLSFMAVQSPSSQIQNIQTQEPVASFGGNPFA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4198g00001 671 MobiDBLite consensus disorder prediction 122 163 - -
Gabi4198g00001 671 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Gabi4198g00001 671 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Gabi4198g00001 671 MobiDBLite consensus disorder prediction 122 148 - -
Gabi4198g00001 671 PANTHER ARFGAP/RECO-RELATED 1 671 IPR044820 GO:0005096
Gabi4198g00001 671 MobiDBLite consensus disorder prediction 312 331 - -
Gabi4198g00001 671 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Gabi4198g00001 671 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Gabi4198g00001 671 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Gabi4198g00001 671 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Gabi4198g00001 671 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Gabi4198g00001 671 MobiDBLite consensus disorder prediction 214 263 - -
Gabi4198g00001 671 CDD ArfGap_AGFG 11 121 - -
Gabi4198g00001 671 MobiDBLite consensus disorder prediction 213 284 - -
Gabi4198g00001 671 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Gabi4198g00001 671 SMART arf_gap_3 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4198g00001 Gabi-Chr4198 44590 51717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4198g00001 14 137 C2H2 Transcription Factor Family AT3G07940 33.582 9.59e-13 67.4