Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4197g00030 ATGAGAAACACTGAAGCAACTCAAGTGGCTATGGAGATAGAAGCAAGTAAACCTGCAGGGAATGGAACAACTTTACCAGGGTTGAGTCCTCTGAGTGAGACCCTTTGGAGAGAGAAGACACACGCAGAGTTGATTGGTGATGTCTCAGCAAGGCTCACATGGAAGGATCTAACTGTGATGGTTACTCTTAGCAATGGAGAAACTCAAAATGTTTTGGAGGGTCTAACTGGGTATGCTGAACCTGGAACTTTCACAGCTCTAATGGGTCCTTCAGGTTCAGGAAAATCCACTCTTCTTGATGCTCTTTCAAGTCGCCTTGCTGCAAATGCCTTCCTCTCAGGCACTATCCTCCTCAATGGTCGCAAAGCCAAGCTCTCTTTTGGTACTGCTGCTTATGTGACACAAGATGACACCTTGATTGGTACCTTAACAGTAAGAGAAACGATATCGTATTCAGCTCGTCTACGTTTGCCAGATAAGATGTCATGGTCAGATAAGAGAGCTCTGGTTGAGAGTACAATTGTAGAAATGGGTCTTCAAGATTGTGCTGACACAGTTATTGGAAACTGGCACTTGCGTGGGATCAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGGCCTAGATTACTTTTCCTTGATGAACCAACCAGTGGTCTTGACAGTGCTTCGGCTTTCTTTGTGACTCAGACACTACGTGCCTTAGCAAGGGATGGGAGAACAGTGATTGCTTCTATTCATCAACCTAGCAGTGAAGTGTTTGAACTATTTGACCAATTGTACTTGCTTTCTGGAGGCAAAACTGTTTATTTTGGCCAAGCTTCAGAAGCATATGAGTTCTTTGCACAAGCTGGCTTTCCATGCCCTGCTTTGAGGAACCCCTCTGATCATTTCCTTAGGTGCATCAATTCTGACTTTGACAAAGTCAAGTCCACTCTTAAAGGGTCCATGAAACTGAGGTTTGAGGGTAGTGATGATCCTCTAGACAAGATCACTACTGCTGAAGCTATCAGAACTCTTTTTGACTACTTCCGCACTTCTCAGCACTCTTATGTTGCAAGACAAAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGATGCAGGAGGAAGCCAGGCTAGTTTCTTCATGCAGTCTTTCACCTTAACCAAGCGTTCATTCATCAACATGTCAAGGGATTTTGGCTACTATTGGCTTAGACTTGTAATCTACATTGTAGTCACTATCTGCATTGGAACCATTTACTTGAACGTGGGAACTGGCTACAACTCAATTCTGGCTAGGGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGACACTATGGTGTTACTGCATTTGTCATCAGCAACACATTATCTGCAACGCCATTCCTGATATTGATCACCTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCGCCTACATCCTGGCTTTTGGCATTACTTTTTCTTTGTGTTGTGTCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTCCCTAACTTCCTCATGGGAATCATAATTGGAGCAGGGATTCAGGGCATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATACCAAAGCCAGTATGGCGCTACCCAATGTCATATATCAGTTTCCACTTCTGGGCATTACAGGGACAATACCAGAATGACTTGAAGGGCTTGATATTTGACAACCAGACACCAGATCTTCCAAAGATACCGGGTGAATACATTCTGGAGAATGTGTTCCAGATTGATGTCACCAGATCAAAGTGGATTGATTTAAGTGTAATCTTGAGCATGATTGTCATCTACCGCATCATTTTCTTCATCATGATCAAAATCAATGAGGATGTGACCCCATGGGTTAGAGGGTATTTAGCCAGGAGAAGAATGCAGCAGAAGAGTGGAACCCAGAATACAACCATTGCACCTGATGTTCTCACTCAGTCCCCATCTCTGAGAACCTACGTTTCCACCCAAACAAAAAATGGTACTTCCAAAAGTTGA 2124 0.4331 MRNTEATQVAMEIEASKPAGNGTTLPGLSPLSETLWREKTHAELIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDTLIGTLTVRETISYSARLRLPDKMSWSDKRALVESTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKSTLKGSMKLRFEGSDDPLDKITTAEAIRTLFDYFRTSQHSYVARQKVDEISKVKGTVLDAGGSQASFFMQSFTLTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVRLHPGFWHYFFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLKGLIFDNQTPDLPKIPGEYILENVFQIDVTRSKWIDLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGTQNTTIAPDVLTQSPSLRTYVSTQTKNGTSKS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4197g00030 707 Pfam ABC transporter 74 223 IPR003439 GO:0005524
Gabi4197g00030 707 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 41 673 - -
Gabi4197g00030 707 Pfam ABC-2 type transporter 385 591 IPR013525 GO:0016020|GO:0140359
Gabi4197g00030 707 Gene3D - 46 290 IPR027417 -
Gabi4197g00030 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 295 IPR003439 GO:0005524
Gabi4197g00030 707 CDD ABCG_EPDR 49 277 - -
Gabi4197g00030 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 289 IPR027417 -
Gabi4197g00030 707 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524|GO:0016887
Gabi4197g00030 707 FunFam ABC transporter G family member 11 46 289 - -
Gabi4197g00030 707 SMART AAA_5 81 252 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4197g00030 Gabi-Chr4197 387276 393129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4197g00030 82 256 Calmodulin-binding Proteins AT2G36910 33.696 2.48e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4197g00030 K05681 - gmx:100803731 1290.4