Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4197g00019 ATGGCAACCCGTAACTATGCTTTTGGAAGACAGGATGAGGCTACTCACCCAGATTCCATGAGAGCCACTTTAGCTGAATTTGCCTCAACTCTCATCTTTGTCTTTGCTGGAGAAGGCTCTAGCCTTGCTTTGGTTAAGATTTACAAGGATGCAGATTTCTCAGCTGGTGAGTTAGTGGCAGTTGCACTTGCACATGCCTTTGCTTTCTTTGCTGCTGTATCTGCTAGCATGCATGTGTCCGGCGGCCATGTCAACCCGGCCATCACTTTCGGTGCTCTCATCGGCGGCAGGATTTCGGTGGTCCGGGCAGTCTACTACTGGATTGCTCAACTTCTGGGTTCTATAGTGGCTGCCCTCTTGCTCAGGCTTGTTACCAATAACATGAGACCAGCAGGGTTCCATGTGGCAGTGGGTATTGGAGCATTTCATGGGCTTATACTTGAGATTGTGATGACATTTGGGCTTATGTACACAGTATATGCTACAGGAATTGATCCTAAAAGGGGTAGCATTGGTACCATTGCACCCTTGGCAATTGGGCTCATTGTTGGGGCAAACAACCTTGTTGGTGTGCCATTTGATGGAGCATGCATGAACCCTGCACTGGCTTTTGGGCCTTCCTTGGTGGGCTGGAGATGGAACTATCACTGGATCTACTGGGTGGGCCCATTTATTGGAGCAGCAATTGCAGCACTGATATATGAATATTGGACAAGCACTTCACCCACTTCAAGTTCTCAGCATAATCAGTATGCAAGTCAGACACCACAAACACACGTAACCCATCAGTGTTCCCCAAAACAGAAGGCAATATCTGAGGCCTTCCAAGGTCACCCCTTTTCATGTGTCTCCCATAACTGCAACTAA 867 0.481 MATRNYAFGRQDEATHPDSMRATLAEFASTLIFVFAGEGSSLALVKIYKDADFSAGELVAVALAHAFAFFAAVSASMHVSGGHVNPAITFGALIGGRISVVRAVYYWIAQLLGSIVAALLLRLVTNNMRPAGFHVAVGIGAFHGLILEIVMTFGLMYTVYATGIDPKRGSIGTIAPLAIGLIVGANNLVGVPFDGACMNPALAFGPSLVGWRWNYHWIYWVGPFIGAAIAALIYEYWTSTSPTSSSQHNQYASQTPQTHVTHQCSPKQKAISEAFQGHPFSCVSHNCN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4197g00019 288 FunFam Probable aquaporin TIP1-1 4 252 - -
Gabi4197g00019 288 Gene3D Glycerol uptake facilitator protein. 4 248 IPR023271 -
Gabi4197g00019 288 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 PANTHER AQUAPORIN-8 6 242 IPR034294 -
Gabi4197g00019 288 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gabi4197g00019 288 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4197g00019 288 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Gabi4197g00019 288 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4197g00019 Gabi-Chr4197 152107 159291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4197g00019 2 259 Major Intrinsic Protein MIP AT1G17810 67.300 2.13e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4197g00019 K09873 - gmx:100805863 390.963