Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4197g00018 ATGAGCTTGGTCTTTAACATAAGCTTTTGCTATGTGATCTTATTGCTTCTATCATGGAACATGGTCTTGTGTGGTGAAATTTTTGATTTCAATCCAGAAGAAAGAGATGCTTTGTTGCTCATAAGGGATTCTTTAAATTCTTCTGCCAATTTGCATGGGAATTGGACAGGCCCTCCTTGTTTAGACAATCAAAGTAGATGGTTTGGTATCACATGTTCCAATTGGCATGTTGTTCTTATTGTCCTTCAAGGAATTAACCTTAGTGGAAGTTTACCCCCTACATTCCTTCAAAACATAACTTTCTTGAGCCAACTTGACTTAAGAAACAACTCACTTTTTGGGCCACTGCCAAACCTCACAAATTTGGTGTTTTTGGAACAAGTCCTATTCTCATTTAATCATTTCTCAGGGTCAATTCCTGTGGAGTATGTTGAACTTCCTAGTCTACAAGTGTTGGAGCTGCAAGAAAATTACTTAGATGGTCAAATCCCACCCTTTGATCAACCATCATTGGCTAGTTTCAATGTGTCATACAATCATCTTGTAGGGCCTATTCCTGAGACTTCTGTGCTCCAAAGGTTCCCAGAGAGTTCCTTTGATAATAATTCAGATCTTTGTGGGAAACCATTGGATAAGTTATGTCCTGCTGAACCTCCTGCCCCATCTCCAGCACCAATTATTATTCCTCCATGCCCAGCAGTGGAAAAAAATAAGAACAAACTTCAAGTATGGATTATTGCTTTGATTTCTGCTGCAGCTGCACTGTTTCTTTTCCTGATCATTATTGCTTTCTTGTTTTTTAAAAGAAGAGCAAGTGGAAAAGAAGCAAGAAGAAATGACTCAGCAGGGTATGTTTTTAGAGCATGGGCAAATAAGATGGTGTATTATAGGAGCAGTGAAGATTCTGAAAGATTAGGCCAATTGGAATTTTCCAACAAGAAATTTCCAGTTTTTGACTTGGATGATTTATTAAGGGCATCAGCAGAAGTTCTAGGAAGAGGGAATTTAGGAATTACATACAAAGCAACACTTGAAACTGGTACTGTTGTGGCAGCAAAGAGATTTAGCTACATGAATGAATTGAGCAAGAAGGAATTTTTCCAGCAGATGCAATTATTAGGACAGATGAAGCATGAAAATCTTGTAGAAATTATCTCCTTTTATTTTTCAGAAGAACAAAAGCTGATCATATATGAACTCATCTCTGGTGGCTCTTTGTTTGAGCTCCTACATGAGGATAGAGGAGTTGGAAGAAAGCCTCTTGATTGGACCACAAGACTGGCTATTATCAAAGACATAGCAAAGGGTCTTGCTTTCCTTCATCATTCTTTGTCTTCTCACAAGGTCCCTCATGCAAACCTCAAATCATCCAATGTCCTAATCCATCAAGATAACCAAGGTTACCATTCCAAGCTCACTGATTATGGCTTCTTCCCTCTACTCCAAGCTAAAAATGAAGCAGAGAAGCTAGCCATAAGGAAGTCACCAGAATTTGATAAAGGGAAGAAGTTGACTCACAAAGCTGATGCATATTGCTTTGGTATCGTTATGCTAGAGATTATAACTGGGAAAGTTCCTGGTCAAATCTTAGGGGAAATTGAAGAAACAACCAATGATCTTTCAGATTGGGTAAGAACAGTGGTGAACAATGATTGGTCCACAGATATACTTGATTTAGAAATATTAGCAGAAAAAGAAGGGCATGATGCAATGTTGGAGCTAACAGAGTTAGCTCTAGAGTGCACAGATATGACACCAGAGAAAAGGCCTAAAATGAGTGTAGTATTGAGGAGAATAGAAGAGATAGAGCAAATGAAAACAGAAAATGACTGA 1833 0.3835 MSLVFNISFCYVILLLLSWNMVLCGEIFDFNPEERDALLLIRDSLNSSANLHGNWTGPPCLDNQSRWFGITCSNWHVVLIVLQGINLSGSLPPTFLQNITFLSQLDLRNNSLFGPLPNLTNLVFLEQVLFSFNHFSGSIPVEYVELPSLQVLELQENYLDGQIPPFDQPSLASFNVSYNHLVGPIPETSVLQRFPESSFDNNSDLCGKPLDKLCPAEPPAPSPAPIIIPPCPAVEKNKNKLQVWIIALISAAAALFLFLIIIAFLFFKRRASGKEARRNDSAGYVFRAWANKMVYYRSSEDSERLGQLEFSNKKFPVFDLDDLLRASAEVLGRGNLGITYKATLETGTVVAAKRFSYMNELSKKEFFQQMQLLGQMKHENLVEIISFYFSEEQKLIIYELISGGSLFELLHEDRGVGRKPLDWTTRLAIIKDIAKGLAFLHHSLSSHKVPHANLKSSNVLIHQDNQGYHSKLTDYGFFPLLQAKNEAEKLAIRKSPEFDKGKKLTHKADAYCFGIVMLEIITGKVPGQILGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDAMLELTELALECTDMTPEKRPKMSVVLRRIEEIEQMKTEND 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4197g00018 610 Gene3D Transferase(Phosphotransferase) domain 1 401 610 - -
Gabi4197g00018 610 Pfam Protein kinase domain 328 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4197g00018 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 605 IPR046959 -
Gabi4197g00018 610 FunFam Leucine-rich repeat receptor-like protein kinase 124 216 - -
Gabi4197g00018 610 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Gabi4197g00018 610 SUPERFAMILY Protein kinase-like (PK-like) 329 600 IPR011009 -
Gabi4197g00018 610 Gene3D Phosphorylase Kinase; domain 1 291 400 - -
Gabi4197g00018 610 ProSiteProfiles Protein kinase domain profile. 325 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4197g00018 610 SUPERFAMILY L domain-like 32 196 - -
Gabi4197g00018 610 Gene3D Ribonuclease Inhibitor 31 216 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4197g00018 Gabi-Chr4197 144803 146934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4197g00018 34 608 Receptor kinase-like Gene Family AT1G68400 34.810 1.02e-107 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4197g00018 Pkinase 7.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4197g00018 - - gmx:102668068 937.176