Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4197g00008 ATGTCATCATCAACCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGAGAGCCATTGGTAATGGAGGAAGTGCAAGTGAGTCCTCCCCAACCAATGGAGATTCGGATTAAGGTTGTCTGCACCTCTCTCTGTCGTAGTGATCTTGCTGCTTGGGAATCTCATGCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGACTGGGAGTGACTGAATTCAAAGAGGGTGACCATGTGCTAACAGTGTTCATTGGAGAATGCATGGCATGCAGGCTGTGCACATCAGGAAAAAGTAACATTTGTCAAGTTTTGGGATTGGAGAGAAAGGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAATAAAAGGGAAGCCTATTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTCCACTCTGGATGTGCAGTGAAAGTCAGCCCTCATGCACCTCTTGAGAAAATATGCCTTCTGAGCTGTGGGGTTGCTGCAGGTATAGGGGCAGCATGGAATGTTGCTGATGTGTCAAAAGGATCAACAGTGGTAATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCCAAACTAAGGGGTGCATCTCGAATAATTGGTGTGGACAACAATCCACAGAAGTGTGAAAAAGCTGAAGCTTTTGGGATTACAGAAGTTGTCAACCCGAACTCCTACAAAGAACCTATTGCCCAGGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAATCATGCTGCGATGGTTGGGGTTTGACTGTAACACTAGGTGTTCCAAAGGTTAAGCCTGAGATGTCAGCTCATTATGCACTATTCTTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTGCCTTCATTGGTAGAGAAGTACGTGAACAAGGAAATCCATATTGATGACTATATAACACACAATTTGCCATTTGATGACATTAACGAAGCTTTCAATCTCATGAGGGACGGAAACTGTCTGCGCTGTGTTATCCACATGCCAAGATAA 1131 0.4385 MSSSTPQVITCKAAVAWGAGEPLVMEEVQVSPPQPMEIRIKVVCTSLCRSDLAAWESHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMACRLCTSGKSNICQVLGLERKGLMHSDQKTRFSIKGKPIYHYCAVSSFSEYTVVHSGCAVKVSPHAPLEKICLLSCGVAAGIGAAWNVADVSKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAEAFGITEVVNPNSYKEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYALFLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIHIDDYITHNLPFDDINEAFNLMRDGNCLRCVIHMPR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4197g00008 376 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
Gabi4197g00008 376 FunFam Alcohol dehydrogenase 6 14 194 - -
Gabi4197g00008 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 338 IPR036291 -
Gabi4197g00008 376 SUPERFAMILY GroES-like 322 373 IPR011032 -
Gabi4197g00008 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Gabi4197g00008 376 Gene3D - 179 317 - -
Gabi4197g00008 376 Gene3D - 14 369 - -
Gabi4197g00008 376 Pfam Alcohol dehydrogenase GroES-like domain 36 159 IPR013154 -
Gabi4197g00008 376 SUPERFAMILY GroES-like 5 183 IPR011032 -
Gabi4197g00008 376 CDD alcohol_DH_plants 9 373 - -
Gabi4197g00008 376 Pfam Zinc-binding dehydrogenase 203 326 IPR013149 -
Gabi4197g00008 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4197g00008 Gabi-Chr4197 59572 64617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4197g00008 37 111 Monolignol Biosynthesis Gene Families AT2G21730 39.241 9.76e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4197g00008 K00001 - gmx:100819938 707.983