Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00052 ATGCCTTCAAAGAGGCTTCAATGGAAATCCTTTGTACTTGGCTGTTTCAAGACCAAGCACACATCCTTGGAAACCTCAAAAATAGTTCCCAAAAAGTCATCTTCAACTAGAATCTCCCTCTCTGATTTAAGCGATTCTTCATCACTCTCTATCATGAGTGATTTATCCAATTCTCTTGTGGGGTCAAATCTTCATATTTTCACTTACCAGGAGCTAAAAGAGATTACACACAACTTCAGCAAATCCAACGTTCTTGGGGAAGGTGGATTTGGGAAGGTGTATAAAGGGTTTATTGATGACAAGTTTCCCAGATTGTCACCTCAGGTTGTAGCAGTTAAGGCCTTAAACTTGGATGGAAAACAAGGCCACAGAGAGTGGTTGGCTGAAGTAATATTTCTGGGGCAGTTGAAGCATCGCCATCTGGTCAACTTAATTGGTTACTGCTGTGAAGATGAGCATAGACTTCTTGTGTACGAATACATGGAACGGGGCAATCTAGAGGAAAAGCTTTTTAAAGGTTATTTGGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGTGCTGCAAAGGGACTTTCTTTCCTTCACGAAGAAGAGAAACCAGTCATATATAGAGATGTTAAAGCCTCAAACATTCTATTGGACGCTGATTACAATGCTAAGCTCTCAGATTTCGGTTTAGCAATAGATGGACCACAAAATGATCAAACACATATTACAGCTAGTGTGATGGGTACCCGTGGTTATGCTGCTCCTGAGTATATCATGTCAGGCCATTTGACAACCATGAGCGATGTGTATAGCTATGGAGTTGTTCTCTTAGAGCTACTCACAGGAAGGAAGTCCGTGGACAAAAAAAGACCCACCAGAGAGCAAGATTTGGTAGAATGGGCAAGGCCTCTATTGAAAGATTACCATAAACTTGAAAGAATAATTGACCCAAGACTTGAGGATCAGTACTCAACTGAAGGGGCTAGAAAAGTAGCAACCTTGGCTTATCAATGTCTAAGCCAACATGCAAAATATAGGCCCACCATGAGGACTGTGGTTAAGACCTTAGAGCCTCTAATGAAATTGAATGATATCCCAATTGGCCATTTTGTTTATGTGGTACCCAGTGAGGTAACCAATGAAGGCTCTCTCAAAGTGAATGAAAAAGGACAAGAAAATGACCATGATGGGGAGAAAACTAAAGAAGAAGAAGAAAAGGTGGAGAAAAAAGAGAAGGGTCACCACCGGCATCGAAAAAGTCGTAGAAGTAGACGTCGTGTGAAGCCATTGAAGTCTCGTGCTGTGTACTCTGACACTGCTCTGTATAAGACTCTTGGTACGAGTTTGTACTCTCCCAAGCAAGAACCAGAAAAAGATGAACGTGTGCCAATATTAGCATGA 1398 0.4149 MPSKRLQWKSFVLGCFKTKHTSLETSKIVPKKSSSTRISLSDLSDSSSLSIMSDLSNSLVGSNLHIFTYQELKEITHNFSKSNVLGEGGFGKVYKGFIDDKFPRLSPQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLSFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPQNDQTHITASVMGTRGYAAPEYIMSGHLTTMSDVYSYGVVLLELLTGRKSVDKKRPTREQDLVEWARPLLKDYHKLERIIDPRLEDQYSTEGARKVATLAYQCLSQHAKYRPTMRTVVKTLEPLMKLNDIPIGHFVYVVPSEVTNEGSLKVNEKGQENDHDGEKTKEEEEKVEKKEKGHHRHRKSRRSRRRVKPLKSRAVYSDTALYKTLGTSLYSPKQEPEKDERVPILA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00052 465 MobiDBLite consensus disorder prediction 444 465 - -
Gabi4191g00052 465 SMART serkin_6 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4191g00052 465 SUPERFAMILY Protein kinase-like (PK-like) 54 356 IPR011009 -
Gabi4191g00052 465 FunFam Serine/threonine-protein kinase BIK1 46 160 - -
Gabi4191g00052 465 MobiDBLite consensus disorder prediction 382 432 - -
Gabi4191g00052 465 CDD STKc_IRAK 85 358 - -
Gabi4191g00052 465 ProSiteProfiles Protein kinase domain profile. 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4191g00052 465 ProSitePatterns Protein kinases ATP-binding region signature. 85 113 IPR017441 GO:0005524
Gabi4191g00052 465 MobiDBLite consensus disorder prediction 386 410 - -
Gabi4191g00052 465 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 364 - -
Gabi4191g00052 465 MobiDBLite consensus disorder prediction 411 429 - -
Gabi4191g00052 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gabi4191g00052 465 PANTHER OS01G0588500 PROTEIN-RELATED 40 358 - -
Gabi4191g00052 465 Pfam Protein tyrosine and serine/threonine kinase 82 355 IPR001245 GO:0004672|GO:0006468
Gabi4191g00052 465 Gene3D Phosphorylase Kinase; domain 1 19 160 - -
Gabi4191g00052 465 Gene3D Transferase(Phosphotransferase) domain 1 161 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00052 Gabi-Chr4191 632784 634881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00052 65 391 Glycoside Hydrolase AT3G07070 46.970 1.72e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4191g00052 PK_Tyr_Ser-Thr 7.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00052 - - gmx:100790454 675.626