Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00024 ATGCAGAATCACAGGTTGAAGCAGCAGCAGCAGCAGCAGCAAGCTCTGATGCAACAAGCTCTTCTCCAACAACAATCTCTCTACCACCCGGGTCTCTTAGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCACACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCAGGTACTGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCTGCTGCTCTTGCCATATTATCTCTTAATGGAAGGCATCTATTTGGGCAGCCGATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTCGGTGATCTCAGTCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACCCCAGTTGTTCTATTGCTCACCAATTTTATCTTTCTCGTGGTTATAGAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGCAGACAAATACGATGCAACTGGGCAACAAAAGGTGCTGCTGGCAATGAGGAGAAGCAAAACTCAGACACCAAAAGTGTGGTGGAACTAACAAACGGCTCATCTGAAGACGGAAAAGAGACATCTAACAGTGATGCTCCTGAAAACAATCCCCAATATACTACTGTTTATGTTGGTAACCTTGCTTCGGAGGTAACACAGATTGATCTCCATCGCCATTTCTATACTCTTGGGGCTGGTGTGATGGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTTAGGTACAGTACTCATGCTGAAGCTGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTATTCTCTGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCATCAAATCCTCTTCCCCCACCTGCTGCTGCTTCTCTGCCAGGCCTCTCTGCGAATGATCTTTTGGCCTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCCCAAGGCCAACATCCTCTTAAACAGGCAGCAATTGGAGCAAGCCAGGCAATATATGATGGTGGCTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCGGTAA 1299 0.4642 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSIAHQFYLSRGYRDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAAGNEEKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLASEVTQIDLHRHFYTLGAGVMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSANDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00024 432 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 352 - -
Gabi4191g00024 432 Gene3D - 253 353 IPR012677 -
Gabi4191g00024 432 FunFam Oligouridylate-binding protein 1C 251 353 - -
Gabi4191g00024 432 SUPERFAMILY RNA-binding domain, RBD 135 237 IPR035979 GO:0003676
Gabi4191g00024 432 MobiDBLite consensus disorder prediction 234 273 - -
Gabi4191g00024 432 FunFam Oligouridylate-binding protein 1A 139 232 - -
Gabi4191g00024 432 Gene3D - 1 137 IPR012677 -
Gabi4191g00024 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 349 IPR000504 GO:0003723
Gabi4191g00024 432 FunFam oligouridylate-binding protein 1B-like isoform X2 1 138 - -
Gabi4191g00024 432 SUPERFAMILY RNA-binding domain, RBD 264 356 IPR035979 GO:0003676
Gabi4191g00024 432 Gene3D - 138 252 IPR012677 -
Gabi4191g00024 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 231 IPR000504 GO:0003723
Gabi4191g00024 432 MobiDBLite consensus disorder prediction 232 273 - -
Gabi4191g00024 432 SMART rrm1_1 275 345 IPR000504 GO:0003723
Gabi4191g00024 432 SMART rrm1_1 142 227 IPR000504 GO:0003723
Gabi4191g00024 432 SMART rrm1_1 57 126 IPR000504 GO:0003723
Gabi4191g00024 432 CDD RRM1_PUB1 58 128 - -
Gabi4191g00024 432 CDD RRM2_PUB1 140 231 - -
Gabi4191g00024 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Gabi4191g00024 432 SUPERFAMILY RNA-binding domain, RBD 54 168 IPR035979 GO:0003676
Gabi4191g00024 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 341 IPR000504 GO:0003723
Gabi4191g00024 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 225 IPR000504 GO:0003723
Gabi4191g00024 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00024 Gabi-Chr4191 334941 339734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00024 139 342 Eukaryotic Initiation Factors Gene Family AT1G49760 28.019 1.55e-10 61.2