Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00023 ATGCAGAATCACAGGTTGAAGCAGCAGCAGCAGCAGCAGCAAGCTCTGATGCAACAAGCTCTTCTCCAACAACAATCTCTCTACCACCCGGGTCTCTTAGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCACACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCAGGTACTGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCTGCTGCTCTTGCCATATTATCTCTTAATGGAAGGCATCTATTTGGGCAGCCGATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTCGGTGATCTCAGTCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGCAGACAAATACGATGCAACTGGGCAACAAAAGGTGCTGCTGGCAATGAGGAGAAGCAAAACTCAGACACCAAAAGTGTGGTGGAACTAACAAACGGCTCATCTGAAGACGGAAAAGAGACATCTAACAGTGATGCTCCTGAAAACAATCCCCAATATACTACTGTTTATGTTGGTAACCTTGCTTCGGAGGTAACACAGATTGATCTCCATCGCCATTTCTATACTCTTGGGGCTGGTGTGATGGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTTAGGTACAGTACTCATGCTGAAGCTGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTATTCTCTGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCATCAAATCCTCTTCCCCCACCTGCTGCTGCTTCTCTGCCAGGCCTCTCTGCGAATGATCTTTTGGCCTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCCCAAGGCCAACATCCTCTTAAACAGGCAGCAATTGGAGCAAGCCAGGCAATATATGATGGTGGCTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCGGTAA 1263 0.4679 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAAGNEEKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLASEVTQIDLHRHFYTLGAGVMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSANDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00023 420 SMART rrm1_1 142 215 IPR000504 GO:0003723
Gabi4191g00023 420 SMART rrm1_1 263 333 IPR000504 GO:0003723
Gabi4191g00023 420 SMART rrm1_1 57 126 IPR000504 GO:0003723
Gabi4191g00023 420 FunFam Oligouridylate-binding protein 1C 239 341 - -
Gabi4191g00023 420 MobiDBLite consensus disorder prediction 222 261 - -
Gabi4191g00023 420 Gene3D - 239 341 IPR012677 -
Gabi4191g00023 420 Gene3D - 1 136 IPR012677 -
Gabi4191g00023 420 Gene3D - 137 234 IPR012677 -
Gabi4191g00023 420 SUPERFAMILY RNA-binding domain, RBD 252 344 IPR035979 GO:0003676
Gabi4191g00023 420 FunFam oligouridylate-binding protein 1B-like isoform X2 1 138 - -
Gabi4191g00023 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Gabi4191g00023 420 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
Gabi4191g00023 420 MobiDBLite consensus disorder prediction 220 261 - -
Gabi4191g00023 420 FunFam oligouridylate-binding protein 1-like isoform X2 139 234 - -
Gabi4191g00023 420 SUPERFAMILY RNA-binding domain, RBD 135 225 IPR035979 GO:0003676
Gabi4191g00023 420 CDD RRM1_PUB1 58 128 - -
Gabi4191g00023 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 337 IPR000504 GO:0003723
Gabi4191g00023 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 340 - -
Gabi4191g00023 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Gabi4191g00023 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Gabi4191g00023 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Gabi4191g00023 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Gabi4191g00023 420 CDD RRM2_PUB1 140 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00023 Gabi-Chr4191 334941 339734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00023 139 330 Eukaryotic Initiation Factors Gene Family AT1G49760 28.718 2.80e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00023 K13201 - gmx:100781227 780.785