Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00022 ATGCAGAATCACAGGTTGAAGCAGCAGCAGCAGCAGCAGCAAGCTCTGATGCAACAAGCTCTTCTCCAACAACAATCTCTCTACCACCCGGGTCTCTTAGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCACACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCAGGTACTGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCTGCTGCTCTTGCCATATTATCTCTTAATGGAAGGCATCTATTTGGGCAGCCGATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTTCAACATATTTGTCGGTGATCTCAGTCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGCAGACAAATACGATGCAACTGGGCAACAAAAGGTGCTGCTGGCAATGAGGAGAAGCAAAACTCAGACACCAAAAGTGTGGTGGAACTAACAAACGGCTCATCTGACGGAAAAGAGACATCTAACAGTGATGCTCCTGAAAACAATCCCCAATATACTACTGTTTATGTTGGTAACCTTGCTTCGGAGGTAACACAGATTGATCTCCATCGCCATTTCTATACTCTTGGGGCTGGTGTGATGGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTTAGGTACAGTACTCATGCTGAAGCTGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTATTCTCTGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCATCAAATCCTCTTCCCCCACCTGCTGCTGCTTCTCTGCCAGGCCTCTCTGCGAATGATCTTTTGGCCTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCATCCCCAAGGCCAACATCCTCTTAAACAGGCAGCAATTGGAGCAAGCCAGGCAATATATGATGGTGGCTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCGGTAA 1260 0.4683 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAAGNEEKQNSDTKSVVELTNGSSDGKETSNSDAPENNPQYTTVYVGNLASEVTQIDLHRHFYTLGAGVMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSANDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00022 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 339 - -
Gabi4191g00022 419 SUPERFAMILY RNA-binding domain, RBD 135 224 IPR035979 GO:0003676
Gabi4191g00022 419 Gene3D - 1 138 IPR012677 -
Gabi4191g00022 419 Gene3D - 139 240 IPR012677 -
Gabi4191g00022 419 MobiDBLite consensus disorder prediction 220 260 - -
Gabi4191g00022 419 SMART rrm1_1 142 215 IPR000504 GO:0003723
Gabi4191g00022 419 SMART rrm1_1 262 332 IPR000504 GO:0003723
Gabi4191g00022 419 SMART rrm1_1 57 126 IPR000504 GO:0003723
Gabi4191g00022 419 FunFam Oligouridylate-binding protein 1C 239 340 - -
Gabi4191g00022 419 FunFam oligouridylate-binding protein 1B-like isoform X2 1 138 - -
Gabi4191g00022 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Gabi4191g00022 419 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
Gabi4191g00022 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 336 IPR000504 GO:0003723
Gabi4191g00022 419 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Gabi4191g00022 419 FunFam oligouridylate-binding protein 1-like isoform X2 139 234 - -
Gabi4191g00022 419 Gene3D - 241 340 IPR012677 -
Gabi4191g00022 419 CDD RRM1_PUB1 58 128 - -
Gabi4191g00022 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Gabi4191g00022 419 MobiDBLite consensus disorder prediction 222 260 - -
Gabi4191g00022 419 CDD RRM2_PUB1 140 219 - -
Gabi4191g00022 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Gabi4191g00022 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 328 IPR000504 GO:0003723
Gabi4191g00022 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00022 Gabi-Chr4191 334941 339734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00022 139 329 Eukaryotic Initiation Factors Gene Family AT1G49760 28.866 1.97e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00022 K13201 - gmx:100814415 777.319