Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00016 ATGGGAAGACAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACTTCAGAGGAGGACAAGAAGCTCATCAACTTTATTCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGCTAGCAGGGCTGTTAAGGTGTGGGAAAAGTTGCAGGCTCAGATGGACAAACTACCTGAGGCCAGACCTAAAGAGAGGGCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAACAGATGGTCCAAGATTGCTTCTCATCTACCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAATACCCACATAAAGAAAAAACTCAAGAAAATGGGAATTGATCCTGTTACCCACAAGCCACTCCCTAATGCAACTGAGCAAACTCAAACACAACCAGAACAACAACAACAACAACAACTAGTCCATCAACCATTGCTAGAACAACATCAACAACAATCTTTCCCAGTTGACCTTGACTCCAAATTGGAACCTGAATATGACCACAATAAGGAGCAGGAGAAGCCAGAGACTTCATTTGAGTCATCAACCATCACTGAAGCTAAAGAGGGAGACCAAATTATGACACCCTTATTGGACTCAATGGAACTGATGAATGTGTTCTCCACAGATGAAGTTCCAATAATAGAACCTGATGAGATTCCAGTTCCCTGTGTTCCTTCCATTTCATCAACAAGTACATCATCATCATCATCATCATCTTCAAATTCATCCAACTTTCTTGAAGACCTGCTGCTCCCAGATTTTGAGTGGTCTCATAATTACAATAATAATACTATTGACAATAACAAGGACAACAACAATACCAATATGGCCTTGTGGGATGATGACTTCATTAGAAGTTGGGATTTGCTTGTTAATGATGATAATGATGGTGACAGAAAGCAAGTGTTTGATGCTGCTCTCTATCAGTACCCAAGAATGATCATGGATTCAGAATCTTGGGACTATGGATTGTTTTGA 1005 0.409 MGRQPCCDKVGLKKGPWTSEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNATEQTQTQPEQQQQQQLVHQPLLEQHQQQSFPVDLDSKLEPEYDHNKEQEKPETSFESSTITEAKEGDQIMTPLLDSMELMNVFSTDEVPIIEPDEIPVPCVPSISSTSTSSSSSSSSNSSNFLEDLLLPDFEWSHNYNNNTIDNNKDNNNTNMALWDDDFIRSWDLLVNDDNDGDRKQVFDAALYQYPRMIMDSESWDYGLF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00016 334 MobiDBLite consensus disorder prediction 233 251 - -
Gabi4191g00016 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4191g00016 334 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gabi4191g00016 334 Gene3D - 70 151 - -
Gabi4191g00016 334 CDD SANT 16 61 IPR001005 -
Gabi4191g00016 334 FunFam MYB transcription factor 11 67 - -
Gabi4191g00016 334 MobiDBLite consensus disorder prediction 174 198 - -
Gabi4191g00016 334 Gene3D - 11 67 - -
Gabi4191g00016 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4191g00016 334 PANTHER F14D16.11-RELATED 1 281 - -
Gabi4191g00016 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4191g00016 334 SMART sant 66 114 IPR001005 -
Gabi4191g00016 334 SMART sant 13 63 IPR001005 -
Gabi4191g00016 334 MobiDBLite consensus disorder prediction 226 251 - -
Gabi4191g00016 334 FunFam MYB-related transcription factor 70 130 - -
Gabi4191g00016 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi4191g00016 334 CDD SANT 74 112 IPR001005 -
Gabi4191g00016 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4191g00016 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4191g00016 334 MobiDBLite consensus disorder prediction 129 149 - -
Gabi4191g00016 334 MobiDBLite consensus disorder prediction 120 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00016 Gabi-Chr4191 211626 214107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00016 1 304 MYB Transcription Factor Family AT1G66230 56.026 9.35e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4191g00016 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00016 K09422 - gmx:100803624 484.182