Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00010 ATGCAGTGGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAATAGAAGTCGGCACTAAGTTGTATGTTTCCAACCTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGATTTGAAGCGTTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCTGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTGAAACGATATAATAATGTACTGTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTAGTAATGGCGAATTGCCCATAACTGCTCGTGTGAATGTCACTGGGGTGAATGGGCGGAGGAAGAGGACAGTTGTAATGACGTCTAGAGGAGGACGAGGTGGAGGTCCTGCTGTGCCTAATCGTGGTGCTGGATGGGGACGGCGAGGTGGCACAAGGAATGCGAGTGGCATAAGGAATGGGGATGGGACTGGGACTGGACGTGGTCGTGGAGGACGTGGTCGTGGTAGGGGGGGTGGAGGACGTGGGCGTGGCAGAAACGATGCTGTTGAGAAGTCAGCTGCAGATCTTGACAAGGAACTGGAGACCTACCATGCTGAGGCCATGCAGATCTCATGA 666 0.491 MQWSIRRTRPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNGELPITARVNVTGVNGRRKRTVVMTSRGGRGGGPAVPNRGAGWGRRGGTRNASGIRNGDGTGTGRGRGGRGRGRGGGGRGRGRNDAVEKSAADLDKELETYHAEAMQIS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00010 221 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 219 - -
Gabi4191g00010 221 CDD RRM_THOC4 34 108 - -
Gabi4191g00010 221 SMART rrm1_1 35 107 IPR000504 GO:0003723
Gabi4191g00010 221 MobiDBLite consensus disorder prediction 190 206 - -
Gabi4191g00010 221 SUPERFAMILY RNA-binding domain, RBD 29 112 IPR035979 GO:0003676
Gabi4191g00010 221 Coils Coil 196 216 - -
Gabi4191g00010 221 Pfam C-terminal duplication domain of Friend of PRMT1 159 215 IPR025715 -
Gabi4191g00010 221 MobiDBLite consensus disorder prediction 136 206 - -
Gabi4191g00010 221 SMART FoP_duplication_2 149 221 IPR025715 -
Gabi4191g00010 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 104 IPR000504 GO:0003723
Gabi4191g00010 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Gabi4191g00010 221 Gene3D - 30 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00010 Gabi-Chr4191 147347 150998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00010 33 108 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 5.57e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00010 K12881 - gmx:100820344 341.273