Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00004 ATGAAGAGAGTAAGCGATGATGATATTTATGCTGGTTCTGGTTCTCAATTCAAACGCCCCTGTAGTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGTCCCTGGAGGAGGAGGAGGAGGAGGTAGTGTTGGTGGGGGAGCAATCACTTCGCAGAAACTTGGGCACAACACTTTCCTGCCAAAGGGATATGAGATAACCCTTGACGAGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATGAGTTTTTTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACATATCATTCTTGGACATGATGATTATGTACCACAGAGAGCATAAGGACATGGGTGAAGCTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTCCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGACAAGACACAAGGATATCGACGAAAGAGGCTTCCTTCTCATGATCCTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAAAACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATAGGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATACAAATGCTCAACAATTTCTTGAGAAAAATAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTCTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATATTTTTTTCACCGGTGGAATAATAAATAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCCTGATCTTATGAAGGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATAGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTTCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAGTGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAATTCACTTAAAGTGA 1758 0.4147 MKRVSDDDIYAGSGSQFKRPCSSSRGDSYGQTQVPGGGGGGGSVGGGAITSQKLGHNTFLPKGYEITLDEDEAPPKKTVEFEEAMSFLNKIKKRFQSDEHVYISFLDMMIMYHREHKDMGEAYSEVATLFKDHRDLLEEFTRFLPDSSAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVDKTQGYRRKRLPSHDPERDLSVEHPEMDDDKTMMNMHKKRRKRESKDRRINRDQDEREPDHTNAQQFLEKNKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFSEKVKEKLNSADDYQAFLKCLHIFFTGGIINRNELQNLVTDLLGKHPDLMKEFNDFLERCENIDRFLAGVMSKKSLRSSKLEDKDKDKDKDKDKEQKREMDGAKEKERYREKKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSFEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKIHLK 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00004 585 PANTHER SIN3B-RELATED 54 585 IPR039774 GO:0003714
Gabi4191g00004 585 Gene3D Paired amphipathic helix 76 148 IPR036600 GO:0006355
Gabi4191g00004 585 Pfam Sin3 family co-repressor 414 506 IPR013194 -
Gabi4191g00004 585 Gene3D Paired amphipathic helix 274 348 IPR036600 GO:0006355
Gabi4191g00004 585 ProSiteProfiles PAH domain profile. 276 346 IPR003822 GO:0006355
Gabi4191g00004 585 SMART hdac_interact2seq4b 412 512 IPR013194 -
Gabi4191g00004 585 FunFam Paired amphipathic helix SIN3-like protein 76 147 - -
Gabi4191g00004 585 SUPERFAMILY PAH2 domain 277 344 IPR036600 GO:0006355
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 364 395 - -
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 16 31 - -
Gabi4191g00004 585 Pfam Paired amphipathic helix repeat 298 343 IPR003822 GO:0006355
Gabi4191g00004 585 Pfam Paired amphipathic helix repeat 100 144 IPR003822 GO:0006355
Gabi4191g00004 585 SUPERFAMILY PAH2 domain 74 146 IPR036600 GO:0006355
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 183 216 - -
Gabi4191g00004 585 ProSiteProfiles PAH domain profile. 77 147 IPR003822 GO:0006355
Gabi4191g00004 585 Coils Coil 485 515 - -
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 1 48 - -
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 228 252 - -
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 147 252 - -
Gabi4191g00004 585 FunFam Paired amphipathic helix protein SIN3 273 348 - -
Gabi4191g00004 585 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00004 Gabi-Chr4191 65287 86371 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4191g00004 Sin3_corepress 8.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00004 K11644 - gmx:100807181 830.476