Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi4191g00002 | ATGAAGAGAGTAAGCGATGATGATATTTATGCTGGTTCTGGTTCTCAATTCAAACGCCCCTATAGTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGTCCCTGGAGGAGGAGGAGGAGGGGGAGGTAGTGTTGGTGGGGGAGCAATCACTTCCCAGAAACTTGGGCACAACGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGGACATTATAAATATGTACCGCAAAAAGCATAAGGACATGGGTGAAGTTTATAGTGAGGTTACTACCCTGTTTAAGGATCATCGAGATTTGCTACTTGGGCACAACACTTTCCTGCCAAAGGGATATGAGATAACCCTTGACGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATGAGTTTTTTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACATATCGTTCTTGGACATGATGATTATGTACCGCAGAGAGCATAAGGACATGGGTGAAGCTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTCCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGACAAGACACAAGGATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAAAACCCTGAGATGGATGATGAGAAAAGAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATAAGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATACAAATGCTCAACAATTTCTTGAGAAAAATAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCAATCAGTTTCTCTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATATTTTTTTCACCGGTGGAATAATAAATAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAACATCCTGATCTTATGAAGGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATAGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTTCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTAACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAGTGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAATTCACTTAAAGTGA | 1932 | 0.4094 | MKRVSDDDIYAGSGSQFKRPYSSSRGDSYGQTQVPGGGGGGGGSVGGGAITSQKLGHNEAISFVNKIKKRFQSDEHVYKSFLDIINMYRKKHKDMGEVYSEVTTLFKDHRDLLLGHNTFLPKGYEITLDEDEAPPKKTVEFEEAMSFLNKIKKRFQSDEHVYISFLDMMIMYRREHKDMGEAYSEVATLFKDHRDLLEEFTRFLPDSSAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVDKTQGYRRKRLPSHDRERDLSVENPEMDDEKRMMNMHKKRRKRESKDKRINRDQDEREPDHTNAQQFLEKNKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAISFSEKVKEKLNSADDYQAFLKCLHIFFTGGIINRNELQNLVTDLLGKHPDLMKEFNDFLERCENIDRFLAGVMSKKSLRSSKLEDKDKDKDKDKEQKREMDGAKEKERYREKKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSFEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGNHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKIHLK | 643 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi4191g00002 | 643 | ProSiteProfiles | PAH domain profile. | 53 | 123 | IPR003822 | GO:0006355 | |
Gabi4191g00002 | 643 | ProSiteProfiles | PAH domain profile. | 336 | 406 | IPR003822 | GO:0006355 | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 424 | 453 | - | - | |
Gabi4191g00002 | 643 | Pfam | Sin3 family co-repressor | 472 | 564 | IPR013194 | - | |
Gabi4191g00002 | 643 | FunFam | Paired amphipathic helix SIN3-like protein | 52 | 123 | - | - | |
Gabi4191g00002 | 643 | Pfam | Paired amphipathic helix repeat | 358 | 403 | IPR003822 | GO:0006355 | |
Gabi4191g00002 | 643 | Pfam | Paired amphipathic helix repeat | 76 | 120 | IPR003822 | GO:0006355 | |
Gabi4191g00002 | 643 | Pfam | Paired amphipathic helix repeat | 160 | 204 | IPR003822 | GO:0006355 | |
Gabi4191g00002 | 643 | FunFam | Paired amphipathic helix protein SIN3 | 333 | 408 | - | - | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
Gabi4191g00002 | 643 | FunFam | Paired amphipathic helix SIN3-like protein | 136 | 207 | - | - | |
Gabi4191g00002 | 643 | Gene3D | Paired amphipathic helix | 334 | 408 | IPR036600 | GO:0006355 | |
Gabi4191g00002 | 643 | SMART | hdac_interact2seq4b | 470 | 570 | IPR013194 | - | |
Gabi4191g00002 | 643 | SUPERFAMILY | PAH2 domain | 134 | 206 | IPR036600 | GO:0006355 | |
Gabi4191g00002 | 643 | SUPERFAMILY | PAH2 domain | 51 | 122 | IPR036600 | GO:0006355 | |
Gabi4191g00002 | 643 | ProSiteProfiles | PAH domain profile. | 137 | 207 | IPR003822 | GO:0006355 | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 243 | 276 | - | - | |
Gabi4191g00002 | 643 | SUPERFAMILY | PAH2 domain | 337 | 404 | IPR036600 | GO:0006355 | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 288 | 312 | - | - | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 207 | 238 | - | - | |
Gabi4191g00002 | 643 | Coils | Coil | 543 | 573 | - | - | |
Gabi4191g00002 | 643 | MobiDBLite | consensus disorder prediction | 207 | 312 | - | - | |
Gabi4191g00002 | 643 | Gene3D | Paired amphipathic helix | 51 | 123 | IPR036600 | GO:0006355 | |
Gabi4191g00002 | 643 | Gene3D | Paired amphipathic helix | 136 | 208 | IPR036600 | GO:0006355 | |
Gabi4191g00002 | 643 | PANTHER | SIN3B-RELATED | 53 | 113 | IPR039774 | GO:0003714 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi4191g00002 | Gabi-Chr4191 | 44631 | 50421 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi4191g00002 | 41 | 156 | WRKY Transcription Factor Family | AT4G12020 | 33.333 | 1.98e-10 | 62.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Gabi4191g00002 | Sin3_corepress | 9.6e-33 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi4191g00002 | K11644 | - | gmx:100807181 | 904.434 |