Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4191g00002 ATGAAGAGAGTAAGCGATGATGATATTTATGCTGGTTCTGGTTCTCAATTCAAACGCCCCTATAGTTCCTCACGTGGTGATTCCTATGGCCAAACCCAAGTCCCTGGAGGAGGAGGAGGAGGGGGAGGTAGTGTTGGTGGGGGAGCAATCACTTCCCAGAAACTTGGGCACAACGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGGACATTATAAATATGTACCGCAAAAAGCATAAGGACATGGGTGAAGTTTATAGTGAGGTTACTACCCTGTTTAAGGATCATCGAGATTTGCTACTTGGGCACAACACTTTCCTGCCAAAGGGATATGAGATAACCCTTGACGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATGAGTTTTTTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACATATCGTTCTTGGACATGATGATTATGTACCGCAGAGAGCATAAGGACATGGGTGAAGCTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTCCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGACAAGACACAAGGATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAAAACCCTGAGATGGATGATGAGAAAAGAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATAAGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATACAAATGCTCAACAATTTCTTGAGAAAAATAAATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCAATCAGTTTCTCTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATATTTTTTTCACCGGTGGAATAATAAATAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAACATCCTGATCTTATGAAGGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATAGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGAAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTTCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTAACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAGTGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAATTCACTTAAAGTGA 1932 0.4094 MKRVSDDDIYAGSGSQFKRPYSSSRGDSYGQTQVPGGGGGGGGSVGGGAITSQKLGHNEAISFVNKIKKRFQSDEHVYKSFLDIINMYRKKHKDMGEVYSEVTTLFKDHRDLLLGHNTFLPKGYEITLDEDEAPPKKTVEFEEAMSFLNKIKKRFQSDEHVYISFLDMMIMYRREHKDMGEAYSEVATLFKDHRDLLEEFTRFLPDSSAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVDKTQGYRRKRLPSHDRERDLSVENPEMDDEKRMMNMHKKRRKRESKDKRINRDQDEREPDHTNAQQFLEKNKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAISFSEKVKEKLNSADDYQAFLKCLHIFFTGGIINRNELQNLVTDLLGKHPDLMKEFNDFLERCENIDRFLAGVMSKKSLRSSKLEDKDKDKDKDKEQKREMDGAKEKERYREKKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSFEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGNHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKIHLK 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4191g00002 643 ProSiteProfiles PAH domain profile. 53 123 IPR003822 GO:0006355
Gabi4191g00002 643 ProSiteProfiles PAH domain profile. 336 406 IPR003822 GO:0006355
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 424 453 - -
Gabi4191g00002 643 Pfam Sin3 family co-repressor 472 564 IPR013194 -
Gabi4191g00002 643 FunFam Paired amphipathic helix SIN3-like protein 52 123 - -
Gabi4191g00002 643 Pfam Paired amphipathic helix repeat 358 403 IPR003822 GO:0006355
Gabi4191g00002 643 Pfam Paired amphipathic helix repeat 76 120 IPR003822 GO:0006355
Gabi4191g00002 643 Pfam Paired amphipathic helix repeat 160 204 IPR003822 GO:0006355
Gabi4191g00002 643 FunFam Paired amphipathic helix protein SIN3 333 408 - -
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 1 51 - -
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 16 31 - -
Gabi4191g00002 643 FunFam Paired amphipathic helix SIN3-like protein 136 207 - -
Gabi4191g00002 643 Gene3D Paired amphipathic helix 334 408 IPR036600 GO:0006355
Gabi4191g00002 643 SMART hdac_interact2seq4b 470 570 IPR013194 -
Gabi4191g00002 643 SUPERFAMILY PAH2 domain 134 206 IPR036600 GO:0006355
Gabi4191g00002 643 SUPERFAMILY PAH2 domain 51 122 IPR036600 GO:0006355
Gabi4191g00002 643 ProSiteProfiles PAH domain profile. 137 207 IPR003822 GO:0006355
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 243 276 - -
Gabi4191g00002 643 SUPERFAMILY PAH2 domain 337 404 IPR036600 GO:0006355
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 288 312 - -
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 207 238 - -
Gabi4191g00002 643 Coils Coil 543 573 - -
Gabi4191g00002 643 MobiDBLite consensus disorder prediction 207 312 - -
Gabi4191g00002 643 Gene3D Paired amphipathic helix 51 123 IPR036600 GO:0006355
Gabi4191g00002 643 Gene3D Paired amphipathic helix 136 208 IPR036600 GO:0006355
Gabi4191g00002 643 PANTHER SIN3B-RELATED 53 113 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4191g00002 Gabi-Chr4191 44631 50421 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4191g00002 41 156 WRKY Transcription Factor Family AT4G12020 33.333 1.98e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4191g00002 Sin3_corepress 9.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4191g00002 K11644 - gmx:100807181 904.434