Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4190g00003 ATGGATTTGGACGATTTCCGATCCATATTGGAGACGGCTGGCGTCGACGTGTGGATGTTCATTGACACCGCAATCGCCGTCGCTTCAGCCGATTACGACGGCGAATTGAAGCACCGGAGAGACGGAATCGTCGAGCGCCTCTACGCCGCGACTTCCGCTCCACCGCAGTGCCGGAATTGCGAAGGAAACCACCGTCTCAATACCAATGGCCACCAAGTGAAGAAACAGAGCAGCCCTAGCCCCAGCCCTGAACGACAACAACAACACCAACACCAACATCGTGGTGCCTCTTCCCCCGCAACGCCGCAGTCTCTCGGAAACGACAACGACAACCACGACGAGTTAGATCCTTACGGTGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTGCAAAATCTTGCGGACATGGATATCACATTCCAAGCGCTGAAGGAGACTGACATAGGAAGGCACGTGAATCGGTTGCGAAAGCATCCCTCCAATGACGTTCGGAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAGATTGTAGATGAGTGGGTGAAGCTGAATCCACAAAGAGGAAGGAGCACTCTCATGGCTGATGGAGATTCGCCTCCCCAGAAAACCACCCTAAACGGGCATCATCCTCAGATTCCTGATTTTGCTAACTCGCCAAATCCACATAATGGGAGTTCTGGGTCTGACCGCAACAACTCTGAAGCAGAACTAAAACCAAAACCAAAAGTAATTCATCGCAATGAAGCTCTGCCCAAATCAACGCCATCACCATCAGTTCCTACCCCTGCTTCTGCCCCTCTAAAAAGACAGTTAGAACATAGAGAGAGCAATTTTGATGCGGAGAGACTTGCTTCGGCAAGAAGACGGCTCCAAGAGAACTACAAAGAAGCTGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACATCCATGAATTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1080 0.4981 MDLDDFRSILETAGVDVWMFIDTAIAVASADYDGELKHRRDGIVERLYAATSAPPQCRNCEGNHRLNTNGHQVKKQSSPSPSPERQQQHQHQHRGASSPATPQSLGNDNDNHDELDPYGGLFDDEQKKILEIKEQLEDPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQRGRSTLMADGDSPPQKTTLNGHHPQIPDFANSPNPHNGSSGSDRNNSEAELKPKPKVIHRNEALPKSTPSPSVPTPASAPLKRQLEHRESNFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGGGGSQGRHW 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4190g00003 359 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 359 IPR044790 -
Gabi4190g00003 359 Pfam TFIIS helical bundle-like domain 149 198 IPR017923 -
Gabi4190g00003 359 SMART TFS2_5 129 200 IPR003617 GO:0005634
Gabi4190g00003 359 Coils Coil 301 328 - -
Gabi4190g00003 359 MobiDBLite consensus disorder prediction 254 268 - -
Gabi4190g00003 359 ProSiteProfiles TFIIS N-terminal domain profile. 124 201 IPR017923 -
Gabi4190g00003 359 MobiDBLite consensus disorder prediction 56 108 - -
Gabi4190g00003 359 MobiDBLite consensus disorder prediction 217 253 - -
Gabi4190g00003 359 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 211 IPR035441 -
Gabi4190g00003 359 CDD TFIIS_I 126 199 - -
Gabi4190g00003 359 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 209 IPR035441 -
Gabi4190g00003 359 MobiDBLite consensus disorder prediction 54 121 - -
Gabi4190g00003 359 MobiDBLite consensus disorder prediction 338 359 - -
Gabi4190g00003 359 MobiDBLite consensus disorder prediction 210 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4190g00003 Gabi-Chr4190 56480 59378 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi4190g00003 Med26 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4190g00003 - - aip:107622503 523.857