Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4190g00002 ATGAGGTCCCTTCTATACAAAAACCTCTTGTTTCTTTCTTCTTCTTGTTCGTCATCACCAGCGCGTGCGCTTCATGTTCGGCTTCAAGTGTGCGAGTTGTCATCCTCGCCGCATTACTGGAGGCGCGTGGAGGAGGAGTCTCGAAACGTGAGGGTTTCGGTGTGGTGGGATTTTGAGAATTGCAACTTGCCGGTGGGCGTTAACGTTTCGAAGATCGCGCCTGCAATAACGGAAGCTGTTAGGGCCAATGGAATTAGAGGTCCTCTTCACATTACCGCTTTCGGCGATGTTCTGCAACTCTCTAAAGCCAACCAGGAAGTACTTGCTTGCACCGGGATTCATCTATCACACGTTCCCAATGGTGGAAAGAATAGTGCCGATAGATCTCTTCTTGTTGATCTTATGTATTGGGTTTCCCAAAATCCTCCACCTGCTCATCTCTTTCTGATATCTGGTGATAGAGACTTTGCTGGCACACTTCACCGTTTAAGAATGAATAACTACAATATCCTGCTCGCAGTTCCAGGGAAGGCTCCTGATGTTCTTTGCAGTTCTGCAACTATAATGTGGCAATGGTCTTCATTGCTTAAGGGAGAAGATCTTAGTGGAAAACACTTCAACCATCCTCCTGATGGCCAGTTTGGTTCTTGGTATGGAAACTCTAAGGTGCCTCTTGAAAAGCCTGTCTCAGCTATAGAGCAGTCTACCTCTTTACAAAATGTGGAGATCTATGAACCTTCCTCAGACTTAAAGTTAGGTACAGTTCCCGAGTCAGTTGCAAGGAAGGTTAAGAGTATATTGAGTTTACATCCAGAAGGGATCTCTATCACAGATCTTCGTGCAGAATTGGCAAATTGCGATGTGCGTTTGGATAAAAACTTATATGGATATAAAAGGTTTTCCCGCTTTCTATTATCAATTCCAAACTTACAGCTCCAGGCTTTAGGTGATGGAAAGTTTTGTGTGCATTCGATCCCCTCTGACTCTCCTGAACCCTTTGAGAGCAGTGCTGTACCATCTACGGCATCTGCTGTTAAGAATGACAGAAGGGCCTATGCAGCAACTTCAAAGCTAAATAGTGCGGGTAAAAATATGGCTAGAGATGCAGATGGGACACCCTCAATGGCATCATTGCATGAAAGGAGTATGGATGATGATCCAAAATCATTCCAACCGATTCCTTCACAAGATAAACCCATTGAGAAAAATGCAGATGGTAAATCATCATTCCCTTCATTGGTTGAAAGAGATGTGTGTCAGCCCCCAAATGAGTTGCGAAAAGCCTCTCTGGATAGTGAGAAGGTTGTGGATGTGGCTAATGCACAATTGTCTGAGATTCAACAGCTGTCCGAGGCCAATGAAGTTTCCAAAACTAAGACGGGTTCCTTAAAAACAAGATCTAAAAAGTCATCTGATAATAACAATGTTAGGTCTGAGGATGTAAGTCACAAAATTTTGGAAAAAATTACAAATTCAGGGAATCACTATGCTGGGAATGATTACAAAATGGTGGAAAACAATGGTATTGCAAAATATGAATCTGGAAAATTTAAAGCCAAGGACAACTATGAGAAGCCAACTGGAAAGGAGGTTGATGAAGTTTGTCGCAGCCCTAATTCTTCACCACCAGTTGATGACTCTCTGGTTGACAAAAGACCTGTTGGTAGTGCAGAAACCTATAGAAAAAGACCAACTTTCTTTAGCTGGATTGGAAGTTGGTGGCCATTTTGGAAAAGCAGTGCAAAGTCTGTTGATTCGGCTGCTCATCAGAACAAGGTGGTTAGTCATTTTGAGGATCCCAAGTTATCTGAACTGGAACAGACTGGTAGTCATTCTGAAGAGTCCAAGTTATCTGAACTGGACAAGACTGGTAGTCATTCTGAAGAGTCCAAGTTATCAGAACTGGGCCAGAATGTTAGTCATTCTGTGAAGCCTGAGTTATTTTCTAATGATTCCTTTTGGAATGTCATGGAATCTTTTGTTTTCACACCCAACGGATCGCTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATATGGCACATAAATTACAAAAGGACGGACCCCTGGTTCTTAGATCTCTCACTGAAAAAGATATCCTTCAAGTGGTGGATTTGTTAATAGCAGAGAAAAAATGGTTGGAGGAAAGCCCCTCCCAAGAATTTCCTTTTAAGGTAACTCAACCAGTTCAGAAGAGCTCATTGATGGGCCAATCTCATCGTGCAAATGGCTTGAGATCTCTCTTTCTAAGTAGAACATCACAGTCCAGCTTGCAAAAATCATATGAACTTGATGTGGAGAAACACAATCAGAGTATTCCTCATACTAGAGTTTCTACACCTGCCACTGAAACGAAATATACTGAGAGGTCTAGAAATGATATGTTACAAGACTGTCAGAAACTAGTGAGTGAGATATTGAGGAAACACCCAGAGGGATATAATATTGGTCGTTTCCGAAAACTATATGTTGATAGGTATGGCTATCATCTTGATTTACAGAAGCTTGGTTATCAAAAGTTGGCATCCTTATTACAGATAATGCCTGGGGTTAAATTAGAGTCGACTTATATTTTTCCTTCCGTTCCTGCTGTTTGTGCTTCTGATTGGAAAACTTCTATTCCTAAATCCCAAGTAACCGATGCTAGTCCTGCAGTCTCCAACTCAGATAGTGAATTATCTGATTCAGCCCCAAAAGATGATAACATTGACTCTCCATGGGAGGAATTAGGTCCTGTTTCTGTCAACAATTCCAACCAGAATGATCTGGAGTCAAAATTAAGTAAGAAAGCCAAAGAACTGGATACATCAAAGCCACCTGTTTATGAACCTATCGTCTCAGGTTATGATTCTTCTGAATCTGAAGGAGATAGCTCTTGTTTAACTCAACCAGAAGAGCACGGAAAGCCTAAATGTAATGAACAAGACAGTTCTCTTTGGGAAGCTCTGGATTTGTGGCACAGCAGCAAGGAAGGAGAGAATAGTGTAAAGAAGCCAGACAATGTTTCTCTGGCTGATCTTTTAAATTCATCCACTGAGTCCACCCAGTGTACCCTCTTTTCACAAGTTCCTTCAGGGAACTACAGAGACAAGCAAAAGACTCCAAAGAATTATTCATTTGTTGCTGACCCGGTCTTACCTAACAAGGACAAGCTGGTTGATGGGATATTAGATGGCTTCAAGAAAGCAGACGAGTCAAAGATGCAAAACTGA 3210 0.4199 MRSLLYKNLLFLSSSCSSSPARALHVRLQVCELSSSPHYWRRVEEESRNVRVSVWWDFENCNLPVGVNVSKIAPAITEAVRANGIRGPLHITAFGDVLQLSKANQEVLACTGIHLSHVPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGTLHRLRMNNYNILLAVPGKAPDVLCSSATIMWQWSSLLKGEDLSGKHFNHPPDGQFGSWYGNSKVPLEKPVSAIEQSTSLQNVEIYEPSSDLKLGTVPESVARKVKSILSLHPEGISITDLRAELANCDVRLDKNLYGYKRFSRFLLSIPNLQLQALGDGKFCVHSIPSDSPEPFESSAVPSTASAVKNDRRAYAATSKLNSAGKNMARDADGTPSMASLHERSMDDDPKSFQPIPSQDKPIEKNADGKSSFPSLVERDVCQPPNELRKASLDSEKVVDVANAQLSEIQQLSEANEVSKTKTGSLKTRSKKSSDNNNVRSEDVSHKILEKITNSGNHYAGNDYKMVENNGIAKYESGKFKAKDNYEKPTGKEVDEVCRSPNSSPPVDDSLVDKRPVGSAETYRKRPTFFSWIGSWWPFWKSSAKSVDSAAHQNKVVSHFEDPKLSELEQTGSHSEESKLSELDKTGSHSEESKLSELGQNVSHSVKPELFSNDSFWNVMESFVFTPNGSLLFSQSRSREDMAHKLQKDGPLVLRSLTEKDILQVVDLLIAEKKWLEESPSQEFPFKVTQPVQKSSLMGQSHRANGLRSLFLSRTSQSSLQKSYELDVEKHNQSIPHTRVSTPATETKYTERSRNDMLQDCQKLVSEILRKHPEGYNIGRFRKLYVDRYGYHLDLQKLGYQKLASLLQIMPGVKLESTYIFPSVPAVCASDWKTSIPKSQVTDASPAVSNSDSELSDSAPKDDNIDSPWEELGPVSVNNSNQNDLESKLSKKAKELDTSKPPVYEPIVSGYDSSESEGDSSCLTQPEEHGKPKCNEQDSSLWEALDLWHSSKEGENSVKKPDNVSLADLLNSSTESTQCTLFSQVPSGNYRDKQKTPKNYSFVADPVLPNKDKLVDGILDGFKKADESKMQN 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 357 414 - -
Gabi4190g00002 1069 Pfam NYN domain 51 186 IPR021139 GO:0004540
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 599 637 - -
Gabi4190g00002 1069 CDD LOTUS 795 850 - -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 518 550 - -
Gabi4190g00002 1069 ProSiteProfiles OST-type HTH domain profile. 794 868 IPR025605 -
Gabi4190g00002 1069 Pfam OST-HTH/LOTUS domain 256 319 IPR025605 -
Gabi4190g00002 1069 Pfam OST-HTH/LOTUS domain 795 853 IPR025605 -
Gabi4190g00002 1069 CDD PIN_limkain_b1_N_like 51 175 - -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 518 532 - -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 1022 1042 - -
Gabi4190g00002 1069 PANTHER LIMKAIN B LKAP 35 805 IPR024768 GO:0005777|GO:0010468
Gabi4190g00002 1069 Pfam OST-HTH Associated domain 674 715 IPR025677 -
Gabi4190g00002 1069 ProSiteProfiles OST-type HTH domain profile. 255 326 IPR025605 -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 876 892 - -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 599 629 - -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 876 974 - -
Gabi4190g00002 1069 Gene3D - 789 856 IPR041966 -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 959 973 - -
Gabi4190g00002 1069 Gene3D - 254 330 IPR041966 -
Gabi4190g00002 1069 MobiDBLite consensus disorder prediction 452 482 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4190g00002 51 198 C2H2 Transcription Factor Family AT5G61190 43.243 1.32e-35 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4190g00002 - - aprc:113850520 1290.4