Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00068 ATGTGGCCCGGTGCCTCTAGGTCAATCAATTACGGTCTCGCACCCGAGATGGGGATGTTCGTCGTGGCACCTGCTTCTTCCTTCCACCATCATCACCACCACAACCAGCAGCAGCAGCAGCAACACCACCACGAGGCTGTTATCTCCGATCCTCATTCAATCAACCCCGCCACCGCACTCGGCGTCGGTGTCATCCCTCTCCTCACCGCAACTCCGTGTCTCGACAGTGACAACAACATGCTCAGTAACCGAAACCGTGGTGGAGGTGGAGGAGGAGGAATTCAGTTTTGGCAGGACCAGCAATCCCATCATAGCCACTACTTGAAGAAGCAAGGTTTTCTTGACCACAATATAAGTTCTTTGAATTTGATTCAGGGTGGCGGCGGAAGCGGCGGTGGCGGCGGCGGCGGCGGCGGTGGGATAACTGCTTCGGCTTCCAATAGTGGGGGAACAACGTGCCAAGACTGTGGAAACCAAGCAAAGAAAGATTGTACAAACAGAAGGTGCAGAACTTGTTGCAAGAGTCGAGGTTTTGATTGCCCTACTCATGTTAAGAGCACTTGGGTTCCCGCAGCACGCCGGAGGGAACGCCAGCTTATGACGTCGTCTGCGGCGGCGGCTGCGGTGGTTGCTGGTTCAAGTGGTTCCACTTCTGGTGCCAAGAAACCTAGGCTTATTACTTCACAGACTACTACAACTTCTCGCACTTCAACTTCTAACACCACTCCTCCTAGGAGCTTTGAAACTAGTTCTAGCCATCAAGATGCGAGTTTCAAAGAGTCATTGCCTGGTCAAGTACGTGCACCTGCGGTGTTCAAGTGTGTTCGAGTAACGGCAGTGGAAGATGGGGAAGATGAGTATGCCTATCAAGCTGTTGTGAAGATTGGAGGCCATGTGTTTAAAGGGTTTCTTTATGATCAAGGGCTTGAAAATAGAGATGTGTATCCTAATCTATCTGAGCTGCATTTGGGTGGTGGTAATGGTGGAAGTGGAAGCGGTGGGAGTGGTGGTGGTGGTGGTGGTGGTGGAGTTGGGAGGAATGGGGTTTCATCTTCATCCCCAATGCTGGATCCTTCTGATGTGTATGCAGCTACAGGTGGAGGGTTAATAGGAGGTTCAGCCTATGGTAATACAATAAATTGA 1143 0.5144 MWPGASRSINYGLAPEMGMFVVAPASSFHHHHHHNQQQQQQHHHEAVISDPHSINPATALGVGVIPLLTATPCLDSDNNMLSNRNRGGGGGGGIQFWQDQQSHHSHYLKKQGFLDHNISSLNLIQGGGGSGGGGGGGGGGITASASNSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSSAAAAAVVAGSSGSTSGAKKPRLITSQTTTTSRTSTSNTTPPRSFETSSSHQDASFKESLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGLENRDVYPNLSELHLGGGNGGSGSGGSGGGGGGGGVGRNGVSSSSPMLDPSDVYAATGGGLIGGSAYGNTIN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00068 380 MobiDBLite consensus disorder prediction 211 261 - -
Gabi4184g00068 380 MobiDBLite consensus disorder prediction 27 46 - -
Gabi4184g00068 380 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 26 365 IPR007818 GO:0003700|GO:0006355
Gabi4184g00068 380 MobiDBLite consensus disorder prediction 326 356 - -
Gabi4184g00068 380 MobiDBLite consensus disorder prediction 211 259 - -
Gabi4184g00068 380 Pfam Domain of unknown function (DUF702) 150 310 - -
Gabi4184g00068 380 NCBIfam LRP1 C-terminal domain 262 309 IPR006511 -
Gabi4184g00068 380 NCBIfam putative zinc finger domain, LRP1 type 152 194 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00068 Gabi-Chr4184 611214 612966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00068 2 361 C2H2 Transcription Factor Family AT5G12330 49.219 2.72e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi4184g00068 DUF702 1.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00068 - - vun:114194574 490.73