Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00065 ATGGAAGAATCAAGTGAATTGCAATCAGAAGAAAATAAAGTCTCTATGGAGAAAAATAAGAAAAGAAAGCTCAAAACACCTGCCCAGGTTACGGCCTTGGAGAAATTTTATAATGAGCACAAGTATCCCACAGAGGAAATGAAATCACAAGTTGCTGAGGAGATAGGGTTGACAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAAATTATTGAAAGGTGAAGCATTTGCTAATGGACGACAAGATCATTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGACTATAGGCATCTAGATCCAAAAGAGGTTGAGAGTCATGGCCTCTACAATCATGATTTTTCAGTAGCCGATATGACCTATGGACATAGGAACCATTATACAGAAAATGTCAGTGGAATGGATGATACATCATCTGAGAGCAGCTCTTTTTTGCGAGATCCACTTCGACATGATGTGGAGCCTTCTAGATATCTAACACCTAATGGAGTTCTTTCACCTGTAAACTCCAAGGGTGCAATTAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGCGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTATCAGGAAGATGGTCCGCTACTTGCTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAATGCCAAACTGCGGATCCAGTTCATGCAGAACCATACTGTGTTGCAAATCTTGTTCATCCGAATTCTCCAGAAATCTCTGCTGTAAAAAGGAAACCCAGTCTTAGCTCTAGAGATGATTCACATTATACTAAATTTAGTTCCCGAGATTCACATATGGAAGGAGTTGACTTCGGCTCGTTGCATGACACTGATTTCCAGCGTAAACAGGATAAGAAAGGCCGCCAGAATATTAAACAAAGGCAAAGTCTTTACAGTTATACCGATCATTTTCCTGGCAGGAACTCTTCCCTGGATTTGTATGAAGACTCTACCGGAGAAGCATCTGCTCATAATGGCACTAAGAATCATAGAATGGGCACTAAGCATGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCACAGTGATCACTATGAAGAGAACCTTGCAGTTAAGCAGACAGAGTTGCTGCTACATGGCTATGATAACATCAATCCAAGAAATGTGCAAAGGAGTGAACATGTAAAATCTAAGCCTTTAAATTCAAACCGTAATTCTCGAGTTTCTGTGGATACTGCAGAAAGAGGACTATCTACTAGGATGTCAAAGGAACAGATGTTTAAGGGGGACAGGAAGGCAAAAAAGCAACATCGCAACGCAGATGGATCAGGGATGCTTTCAAATGAAATCACAGTCACAAAACGAGTTAAAGTTGATGATATGCCTCAGCCGTACAATGTGAAACAATCACCTGTTGCTGAGATGGAACAAAGGAAAAATCAGAGATCTGCTGCAGAGATGCCATCTAGCTTTAGCGAGGATGAAACTGCTGAAACCAGTTCCTCAATGGATTAA 1569 0.4111 MEESSELQSEENKVSMEKNKKRKLKTPAQVTALEKFYNEHKYPTEEMKSQVAEEIGLTEKQISGWFCHRRLKDKKLLKGEAFANGRQDHSSGVIQDRGSGLGQDSCGSSKHGDYRHLDPKEVESHGLYNHDFSVADMTYGHRNHYTENVSGMDDTSSESSSFLRDPLRHDVEPSRYLTPNGVLSPVNSKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYQEDGPLLAVEFDPLPPGAFECQTADPVHAEPYCVANLVHPNSPEISAVKRKPSLSSRDDSHYTKFSSRDSHMEGVDFGSLHDTDFQRKQDKKGRQNIKQRQSLYSYTDHFPGRNSSLDLYEDSTGEASAHNGTKNHRMGTKHGVEGMRSDSASNHSDHYEENLAVKQTELLLHGYDNINPRNVQRSEHVKSKPLNSNRNSRVSVDTAERGLSTRMSKEQMFKGDRKAKKQHRNADGSGMLSNEITVTKRVKVDDMPQPYNVKQSPVAEMEQRKNQRSAAEMPSSFSEDETAETSSSMD 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 88 106 - -
Gabi4184g00065 522 Gene3D - 8 92 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 87 111 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 442 457 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 491 522 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 409 522 - -
Gabi4184g00065 522 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Gabi4184g00065 522 SMART HOX_1 18 80 IPR001356 GO:0003677
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 419 434 - -
Gabi4184g00065 522 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Gabi4184g00065 522 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 522 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 322 358 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 270 367 - -
Gabi4184g00065 522 CDD homeodomain 20 75 IPR001356 GO:0003677
Gabi4184g00065 522 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 7 25 - -
Gabi4184g00065 522 MobiDBLite consensus disorder prediction 275 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00065 Gabi-Chr4184 535249 541715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00065 3 522 Homeobox Transcription Factor Family AT4G03250 42.018 8.67e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi4184g00065 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00065 - - gmx:100803515 825.854