Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00063 ATGTCACTGACCGATAGAATGACTTCGGATCTTAGCAGAACTGGTACTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGAAAAGAAGAGAAGCATCTTAAACTGAGCCATGTCTCTAGAATTATATCTGGACAACGCACACCAATCTTTCAAAGATATCCGCGACCAGAGAAGGAATACCAGTCTTTTTCTCTTATCTACAATGATAGGTCACTGGATTTGATATGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCACGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGAGATCATCTTCGCCTTCATAGCCCATATGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTAGATGTGGTTTTGTATGCTGTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTCCACTCTGTGTCATCCGGAGGATCAGATAGTATGCATGGTCATATGAAGACGATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGTTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAGTCACCGAGTTGGGAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCAGCCTTAGTGACTAAACAAGGTGAAATTTTCTCCTGGGGGGAGGAATCAGGAGGTAGACTTGGGCATGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTCTAAGTAATACAAATATCGAACTAGTAGCTTGTGGGGAGTATCATACGTGTGCTGTAACTCTTTCTGGTGATCTTTACACATGGGGTAATGGCACGTACAATTATGGTCTTCTGGGACATGGAAATCAAGTGAGCCACTGGGTCCCCAAAAGAGTAAATGGCCCCTTGGAAGGTATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACGTTTGGTGTTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCGAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACCGTGCGGGCTGCGTGTGGTGTTTGGCATACTGCGGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGTTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCGGCCCTTGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCAGGCCTTGTCTATTCGATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCGTCTCGCGTTGAAGGAAAGCTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCGGTTTTAACTTTAAGGACTGAAGTTTACACTTGGGGGAAGGGTGCAAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCGACAGTAGTAGAAGCTTTGAAAGACAAACATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCTGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGTCTGCCATTTAATTTCAAAAGAAAGCGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTTAGGAAAACTGCAGAAACTGATTCATCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGGTCTCTTGAGTTAATAGATAAGGATGATAAATTGGATTCCAGATCTCGCAATCAACTTGCCAGGTTTTCTTCAATGGAAACCTTGAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCGCAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCTTCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACTACTCCAACCCCAACGCTGGGAGGTCTTACTTCCCCAAAGATAGTTGTGGATGATGCTAAAAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAGACCTGACTCGGAAAGCTCAACTTCAAGAAGTTGAGTTGGAAAGAACAACCAAACAGCTAAAAGATGCAATAGCAATTGCTGGGGAAGAAACTGCAAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCGGCTAGGAATGTCAAATCTCCTTCTCTTGCTTCTTTTGGTTCAAACCCTAGTTCCATTGAAGTTGGCTATACTTCCATTGATCGATTGAGTATTCAAGCAACTAGCCCAGAAGCTGACTTTACTGGATCAAATAACCAGTCACTTTCTAATGGATCAAGCACCATCAGTAACCGTAGTGCAGGTCACAATAAACAGAGCCAGCCAGATTCAACTAATAGAAATGGGAGCAGAACGAAGGATAGTGAATCCCGTAATGAGACTGAATGGGTCGAGCAAGATGAACCAGGTGTATATATTACGCTCACCTCCCTACCAGGAGGTGCAATAGATCTAAAGAGAGTTCGCTTCAGTCGAAAGCGGTTTAGTGAGAAACAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTACATGAACAGTACAATGTGCGCATGATTGATAAGTCCAATGTTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3324 0.435 MSLTDRMTSDLSRTGTVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPPKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGSHRVGSCLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGLVYSMGSPVYGQLGNPQADGKLPSRVEGKLSKSFVEEIACGAYHVAVLTLRTEVYTWGKGANGRLGHGDTDDRNTPTVVEALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTAETDSSSHSSVSRRGSINQGSLELIDKDDKLDSRSRNQLARFSSMETLKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVEDLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASFGSNPSSIEVGYTSIDRLSIQATSPEADFTGSNNQSLSNGSSTISNRSAGHNKQSQPDSTNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGAIDLKRVRFSRKRFSEKQAEQWWAENRARVHEQYNVRMIDKSNVGVGSEDLAH 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 1022 1038 - -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 834 863 - -
Gabi4184g00063 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 490 661 - -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 789 803 - -
Gabi4184g00063 1107 SUPERFAMILY PH domain-like 20 128 - -
Gabi4184g00063 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Gabi4184g00063 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 238 489 - -
Gabi4184g00063 1107 Pfam Unstructured region between BRX_N and BRX domain 958 1027 - -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 982 1038 - -
Gabi4184g00063 1107 SUPERFAMILY FYVE/PHD zinc finger 656 726 IPR011011 -
Gabi4184g00063 1107 SUPERFAMILY RCC1/BLIP-II 266 657 IPR009091 -
Gabi4184g00063 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Gabi4184g00063 1107 Gene3D - 19 137 IPR011993 -
Gabi4184g00063 1107 SMART fyve_4 654 723 IPR000306 GO:0046872
Gabi4184g00063 1107 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Gabi4184g00063 1107 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Gabi4184g00063 1107 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 660 722 IPR017455 -
Gabi4184g00063 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 551 600 IPR000408 -
Gabi4184g00063 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 499 548 IPR000408 -
Gabi4184g00063 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 605 652 IPR000408 -
Gabi4184g00063 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Gabi4184g00063 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 380 432 IPR000408 -
Gabi4184g00063 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Gabi4184g00063 1107 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Gabi4184g00063 1107 Coils Coil 922 942 - -
Gabi4184g00063 1107 Pfam Transcription factor BRX N-terminal domain 917 950 IPR027988 -
Gabi4184g00063 1107 CDD PH_PLC_plant-like 19 129 - -
Gabi4184g00063 1107 FunFam Putative E3 ubiquitin-protein ligase HERC1 662 730 - -
Gabi4184g00063 1107 Gene3D - 497 667 IPR009091 -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 143 173 - -
Gabi4184g00063 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 729 IPR013083 -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 982 1021 - -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Gabi4184g00063 1107 CDD FYVE_like_SF 665 718 - -
Gabi4184g00063 1107 Coils Coil 866 907 - -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 328 IPR000408 -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 137 191 - -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Gabi4184g00063 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 942 - -
Gabi4184g00063 1107 Gene3D - 219 390 IPR009091 -
Gabi4184g00063 1107 Gene3D - 391 493 IPR009091 -
Gabi4184g00063 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Gabi4184g00063 1107 MobiDBLite consensus disorder prediction 766 803 - -
Gabi4184g00063 1107 Pfam FYVE zinc finger 656 722 IPR000306 GO:0046872
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 541 559 IPR000408 -
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 599 620 IPR000408 -
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Gabi4184g00063 1107 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Gabi4184g00063 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00063 Gabi-Chr4184 511096 521008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00063 926 1095 Major Intrinsic Protein MIP AT1G31880 33.898 8.00e-18 84.7