Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00056 ATGGCTTTCTTTAGGAACTTTTTAATTGATACAGTCTCACATGGTGTCATGGAAGATAAAGGTCAAGGACAGAATGCTAATAGAGTCCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCCAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGAATGAGAGTGATGGTGAACCAGATGGTCCCAGTAGACTTCGAAATGAGGCAATAGCTGATGATGGAGATGTTATGAGAGAACCAAACTTACAGACTTCTGGTAGTAAAACAGCTACGGTCGGAAGGTGGGGTTCAACATTTTGGAAGGATTGCGGGCCTATGTGCGCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGGGAGAAGATTGAACTCAGAAGATGATGATGGACCAAAGGAGGCAGGAGAAGATCCAGGAGGCCATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCGTTGCATTACAGAGGGGTTCATAAGCCCACTGAATCAAATTCATGGCCTCAACGGATGTCTACTACTGTAAATAGAACTGTGCATAGGAAATCTAGGATTTCAGATGATGCTGAAGATAATGACGGTGATGATGATAATGATGATGGTGATGCTGACTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGTCACAAGTGGTCGTGCTGCTAACGAGGATAAAGATTGGGAAGGTGAAGGCTTGGATGTAGATGATGATAGTGATGAAAATTTAGATTTCTCAGATGATGATGAATCTTTCTATGCTAAAAAACCAAAGGGAAGGCAACGAGGTAAGGTTGGACAAAGCATAAAATCTACCAGAGATCGCAAAGCATATGCTGCATCTGGCCGGCAAAGAAGAGTTAAATCATCTTTTGAAGACAATGAGTCAACAGCAGAGGATTCTGACAGTGATAGTGACGAGGATTTCAAGAGACCAAAAAAGAGAGGTGTTCATGTCCGTAAGAATAATGGTCGCTCTTCTGCAGCCACAAGTTTTTCGATGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGCATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGCAAGAAGAAAAAGTCCCAAAGGGAAGAAATTGATGAGGACGATGGGGACTACATTGAAAAGGTGCTTTGGCATCAGCCGAAGGGCACGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAACCTGTTTTAATGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAAATGGAATTTTTAATAAAATGGAAAGGGCAATCACATTTGCACTGTCAGTGGAAGTCTTTCACCGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAGATAATGGACTTTGTCAGGTACAGGAGGACAATATCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTTCACATAGAATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACGTCGATATCGCATTTGCTCAACATGCTATTGATGAGTATAAGGCTCGTGAAGATGCAATGTCCGTTCAAGGAAAAATGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTTCGCGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGCAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCGCAGCAAATCCATGGTCCTTTTCTTGTGGTTGTACCATTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAGGCTGGAAAACCAATAAAATTCAATGCGCTGTTGACTACATATGAAGTGGTTTTGAAGGATAAGGCTTTTCTATCCAAGATCAAATGGAATTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTACACAACTCTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATTACTGGTACTCCTCTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTTCTTGATCCTAACAAGTTCAATAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCGAATCTTCATATGGAATTGAGGCCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGATTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGCAACTTTCATAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAGTTGAAGAAGTGTTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTTATACTTGATAAGCTACTTGTTAAATTGCATGAAACCAAGCATCGTGTTTTGATCTTCTCGCAGATGGTTAGGATGTTGGATATACTAGCAGAGTATATGTCACTTCGAGGCTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTCCTTTCAACACGAGCTGGAGGTCTGGGTATCAACCTTGCCACGGCAGACACTGTCATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAGATGGTTCTGGATCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAGGAAAGAAGCCAAAAAAGGAGGAAGCTATTTTGACAAAAATGAGCTGTCCGCAATCTTACGATTTGGAGCAGAAGAACTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATTGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAACAAGGTCATGAATTATTAGGTGCATTTAAGGTTGCCAATTTCTGCAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCCAGGAATATCAAAAGCTATGCAGAGGATAATCAATCTGAAAAATGTACTAAGAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGTCGGAAAGCAGATTACTCAGCTCCTGCAGTACCAATGATTGAGGGAGCATCTGTCCAAGTCAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGGTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAACCAAATCGACTTAATAGTTGCTGAGGTTGGTGGTACGGTTGGAGCAGCTCCACCTGAAGCACAGACTGAACTTTTCAATGCTCTGATTGATGGCTGTACGGAAGCAGTGGAACTTGGGAGCCTGGATCTAAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTAACCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATTAGTCGATATGAAGATCCCATTGCACAATTCCGTGTTTTAAGTTATCTCAAACCTGCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTAGGAATACATTACCATGGTTTTGGGAATTGGGAAAATATTAGATTAGATGAAAAGCTTGGCCTTATGAGAAAAATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTGCCGCGAGCTCCAAATTTGAGAGACCGTGCTAGTGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTAGAACATGCCAATAGCAGAGTTGCGCGGAAGCCTTCCAAGAAAGAGAGAGAGCATATGATGAACATCTCACTGTTGCGTGGACAGGAGAAGAAGAAAAAATTGGGTTCTGTTAATGTCCAAATGAGAAAGGATAGACTTCAGAAACCCCACAAGGTTGAACCTATAATAAAAGAGGAGGGGGAAATGTCCGACAATGATGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGACAACGAGTGCCAATCTTCCCAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTACAGCTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAACAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTCTGGAAATATGTCTCCACCTTTTCGCATCTTTCTGGGGAGAGGCTTCATCAAATATATTCTAAACTTAAACAGGAGCAAGAAGATGAGGCAGGGGTTGGCCCATCTCATGTCAATGGGTCAGCATCTATTTCATTTAGCAGAAATGGAAACCCATTCCCTCGCAGTACCGAGAGGCAAAGAGTATTAAAAAATACGACTACCTACCAAATGCCAGAACCAGTTAATAATGTAGGGAAATCTGAGGCATGGAAACGAAGAAAACGAACTGAAAGTGATGATCATTTCCTGGGTCAGCCGCCACCTCAAAGAACAATGAGTAATGGAATCCGGACTACTGATCCTAACTCACTTGGGATCCTTGGTGCTGGACCATTGGACAAACGCTTTGTTAGTGAGAAACCTCATAGGACACAGCCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAG 5280 0.4106 MAFFRNFLIDTVSHGVMEDKGQGQNANRVHRSVGNECTDATSSEKEFDMNMEAQNESDGEPDGPSRLRNEAIADDGDVMREPNLQTSGSKTATVGRWGSTFWKDCGPMCAQNGSESGQESKSGSDYRNADGSEDNSLDGRGRRLNSEDDDGPKEAGEDPGGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGVHKPTESNSWPQRMSTTVNRTVHRKSRISDDAEDNDGDDDNDDGDADYEEEDEADEDDPDDADFEPVTSGRAANEDKDWEGEGLDVDDDSDENLDFSDDDESFYAKKPKGRQRGKVGQSIKSTRDRKAYAASGRQRRVKSSFEDNESTAEDSDSDSDEDFKRPKKRGVHVRKNNGRSSAATSFSMRNSEVRTSSRTVRKASYVESEESEEADEGKKKKSQREEIDEDDGDYIEKVLWHQPKGTAEDAQRNNRSTEPVLMSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFTELQNLSGFKKVLNYTKKIMDFVRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIISHRISKDNSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQHAIDEYKAREDAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKAGKPIKFNALLTTYEVVLKDKAFLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFNSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRIEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVKLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLERKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQGHELLGAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEDNQSEKCTKRKKKEPEPPERVQKRRKADYSAPAVPMIEGASVQVRNWSYGNLSKRDALRFSRSVMKYGNENQIDLIVAEVGGTVGAAPPEAQTELFNALIDGCTEAVELGSLDLKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLSYLKPANWSKGCGWNQIDDARLLLGIHYHGFGNWENIRLDEKLGLMRKIAPVELQHHETFLPRAPNLRDRASALLEQELAVLGVEHANSRVARKPSKKEREHMMNISLLRGQEKKKKLGSVNVQMRKDRLQKPHKVEPIIKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDEAGVGPSHVNGSASISFSRNGNPFPRSTERQRVLKNTTTYQMPEPVNNVGKSEAWKRRKRTESDDHFLGQPPPQRTMSNGIRTTDPNSLGILGAGPLDKRFVSEKPHRTQPGGFPSRQGFSSGIK 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00056 1759 CDD CD2_tandem 532 588 - -
Gabi4184g00056 1759 SUPERFAMILY Chromo domain-like 513 589 IPR016197 -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 365 390 - -
Gabi4184g00056 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 850 1132 IPR027417 -
Gabi4184g00056 1759 SMART ultradead3 622 821 IPR014001 -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 224 254 - -
Gabi4184g00056 1759 FunFam Photoperiod-independent early flowering 1 596 870 - -
Gabi4184g00056 1759 CDD SF2_C_SNF 932 1067 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1643 1663 - -
Gabi4184g00056 1759 Pfam Helicase conserved C-terminal domain 943 1056 IPR001650 -
Gabi4184g00056 1759 FunFam protein CHROMATIN REMODELING 5 isoform X2 536 588 - -
Gabi4184g00056 1759 Coils Coil 1086 1106 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 50 416 - -
Gabi4184g00056 1759 Gene3D - 407 533 - -
Gabi4184g00056 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 847 IPR027417 -
Gabi4184g00056 1759 Gene3D - 857 1087 IPR027417 -
Gabi4184g00056 1759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 638 810 IPR014001 -
Gabi4184g00056 1759 CDD CD1_tandem 419 499 - -
Gabi4184g00056 1759 Pfam Domain of unknown function (DUF4208) 1535 1627 IPR025260 -
Gabi4184g00056 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 198 1689 - -
Gabi4184g00056 1759 Gene3D - 617 856 IPR038718 -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 126 169 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 59 77 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1685 1700 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 196 213 - -
Gabi4184g00056 1759 Gene3D - 536 588 - -
Gabi4184g00056 1759 SMART DUF4208_2 1523 1628 IPR025260 -
Gabi4184g00056 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 534 598 IPR000953 -
Gabi4184g00056 1759 Coils Coil 1140 1160 - -
Gabi4184g00056 1759 Gene3D - 1353 1461 - -
Gabi4184g00056 1759 Pfam Chromo (CHRromatin Organisation MOdifier) domain 535 589 IPR023780 -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1706 1720 - -
Gabi4184g00056 1759 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 857 1087 - -
Gabi4184g00056 1759 SUPERFAMILY Chromo domain-like 418 501 IPR016197 -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 82 96 - -
Gabi4184g00056 1759 SMART helicmild6 972 1056 IPR001650 -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 271 289 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1217 1245 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1676 1759 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1632 1663 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 391 416 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 111 125 - -
Gabi4184g00056 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 421 509 IPR000953 -
Gabi4184g00056 1759 SMART chromo_7 532 591 IPR000953 -
Gabi4184g00056 1759 SMART chromo_7 421 502 IPR000953 -
Gabi4184g00056 1759 Pfam SNF2-related domain 645 914 IPR000330 GO:0005524|GO:0140658
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 309 337 - -
Gabi4184g00056 1759 MobiDBLite consensus disorder prediction 1210 1246 - -
Gabi4184g00056 1759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1097 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00056 Gabi-Chr4184 444704 463414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00056 648 1083 RAD5 or RAD16-like Gene Family AT1G02670 26.139 2.14e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4184g00056 SNF2_N 1.9e-64 CL0023