Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00055 ATGGCTTTCTTTAGGAACTTTTTAATTGATACAGTCTCACATGGTGTCATGGAAGATAAAGGTCAAGGACAGAATGCTAATAGAGTCCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCCAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGAATGAGAGTGATGGTGAACCAGATGGTCCCAGTAGACTTCGAAATGAGGCAATAGCTGATGATGGAGATGTTATGAGAGAACCAAACTTACAGACTTCTGGTAGTAAAACAGCTACGGTCGGAAGGTGGGGTTCAACATTTTGGAAGGATTGCGGGCCTATGTGCGCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGGGAGAAGATTGAACTCAGAAGATGATGATGGACCAAAGGAGGCAGGAGAAGATCCAGGAGGCCATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCGTTGCATTACAGAGGGGTTCATAAGCCCACTGAATCAAATTCATGGCCTCAACGGATGTCTACTACTGTAAATAGAACTGTGCATAGGAAATCTAGGATTTCAGATGATGCTGAAGATAATGACGGTGATGATGATAATGATGATGGTGATGCTGACTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGTCACAAGTGGTCGTGCTGCTAACGAGGATAAAGATTGGGAAGGTGAAGGCTTGGATGTAGATGATGATAGTGATGAAAATTTAGATTTCTCAGATGATGATGAATCTTTCTATGCTAAAAAACCAAAGGGAAGGCAACGAGGTAAGGTTGGACAAAGCATAAAATCTACCAGAGATCGCAAAGCATATGCTGCATCTGGCCGGCAAAGAAGAGTTAAATCATCTTTTGAAGACAATGAGTCAACAGCAGAGGATTCTGACAGTGATAGTGACGAGGATTTCAAGAGACCAAAAAAGAGAGGTGTTCATGTCCGTAAGAATAATGGTCGCTCTTCTGCAGCCACAAGTTTTTCGATGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGCATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGCAAGAAGAAAAAGTCCCAAAGGGAAGAAATTGATGAGGACGATGGGGACTACATTGAAAAGGTGCTTTGGCATCAGCCGAAGGGCACGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAACCTGTTTTAATGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAAATGGAATTTTTAATAAAATGGAAAGGGCAATCACATTTGCACTGTCAGTGGAAGTCTTTCACCGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAGATAATGGACTTTGTCAGGTACAGGAGGACAATATCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTTCACATAGAATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACGTCGATATCGCATTTGCTCAACATGCTATTGATGAGTATAAGGCTCGTGAAGATGCAATGTCCGTTCAAGGAAAAATGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTTCGCGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGCAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCGCAGCAAATCCATGGTCCTTTTCTTGTGGTTGTACCATTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAGGCTGGAAAACCAATAAAATTCAATGCGCTGTTGACTACATATGAAGTGGTTTTGAAGGATAAGGCTTTTCTATCCAAGATCAAATGGAATTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTACACAACTCTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATTACTGGTACTCCTCTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTTCTTGATCCTAACAAGTTCAATAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCGAATCTTCATATGGAATTGAGGCCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGATTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGCAACTTTCATAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAGTTGAAGAAGTGTTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTTATACTTGATAAGCTACTTGTTAAATTGCATGAAACCAAGCATCGTGTTTTGATCTTCTCGCAGATGGTTAGGATGTTGGATATACTAGCAGAGTATATGTCACTTCGAGGCTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTCCTTTCAACACGAGCTGGAGGTCTGGGTATCAACCTTGCCACGGCAGACACTGTCATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAGATGGTTCTGGATCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAGGAAAGAAGCCAAAAAAGGAGGAAGCTATTTTGACAAAAATGAGCTGTCCGCAATCTTACGATTTGGAGCAGAAGAACTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATTGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAACAAGGTCATGAATTATTAGGTGCATTTAAGGTTGCCAATTTCTGCAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCCAGGAATATCAAAAGCTATGCAGAGGATAATCAATCTGAAAAATGTACTAAGAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGTCGGAAAGCAGATTACTCAGCTCCTGCAGTACCAATGATTGAGGGAGCATCTGTCCAAGTCAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGGTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAACCAAATCGACTTAATAGTTGCTGAGGTTGGTGGTACGGTTGGAGCAGCTCCACCTGAAGCACAGACTGAACTTTTCAATGCTCTGATTGATGGCTGTACGGAAGCAGTGGAACTTGGGAGCCTGGATCTAAAGGTTGGTATAAGTATAACAGGGCCTTTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTAACCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATTAGTCGATATGAAGATCCCATTGCACAATTCCGTGTTTTAAGTTATCTCAAACCTGCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTAGGAATACATTACCATGGTTTTGGGAATTGGGAAAATATTAGATTAGATGAAAAGCTTGGCCTTATGAGAAAAATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTGCCGCGAGCTCCAAATTTGAGAGACCGTGCTAGTGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTAGAACATGCCAATAGCAGAGTTGCGCGGAAGCCTTCCAAGAAAGAGAGAGAGCATATGATGAACATCTCACTGTTGCGTGGACAGGAGAAGAAGAAAAAATTGGGTTCTGTTAATGTCCAAATGAGAAAGGATAGACTTCAGAAACCCCACAAGGTTGAACCTATAATAAAAGAGGAGGGGGAAATGTCCGACAATGATGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGACAACGAGTGCCAATCTTCCCAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTACAGCTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAACAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTCTGGAAATATGTCTCCACCTTTTCGCATCTTTCTGGGGAGAGGCTTCATCAAATATATTCTAAACTTAAACAGGAGCAAGAAGATGAGGCAGGGGTTGGCCCATCTCATGTCAATGGGTCAGCATCTATTTCATTTAGCAGAAATGGAAACCCATTCCCTCGCAGTACCGAGAGGCAAAGAGTATTAAAAAATACGACTACCTACCAAATGCCAGAACCAGTTAATAATGTAGGGAAATCTGAGGCATGGAAACGAAGAAAACGAACTGAAAGTGATGATCATTTCCTGGGTCAGCCGCCACCTCAAAGAACAATGAGTAATGGAATCCGGACTACTGATCCTAACTCACTTGGGATCCTTGGTGCTGGACCATTGGACAAACGCTTTGTTAGTGAGAAACCTCATAGGACACAGCCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAG 5298 0.4102 MAFFRNFLIDTVSHGVMEDKGQGQNANRVHRSVGNECTDATSSEKEFDMNMEAQNESDGEPDGPSRLRNEAIADDGDVMREPNLQTSGSKTATVGRWGSTFWKDCGPMCAQNGSESGQESKSGSDYRNADGSEDNSLDGRGRRLNSEDDDGPKEAGEDPGGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGVHKPTESNSWPQRMSTTVNRTVHRKSRISDDAEDNDGDDDNDDGDADYEEEDEADEDDPDDADFEPVTSGRAANEDKDWEGEGLDVDDDSDENLDFSDDDESFYAKKPKGRQRGKVGQSIKSTRDRKAYAASGRQRRVKSSFEDNESTAEDSDSDSDEDFKRPKKRGVHVRKNNGRSSAATSFSMRNSEVRTSSRTVRKASYVESEESEEADEGKKKKSQREEIDEDDGDYIEKVLWHQPKGTAEDAQRNNRSTEPVLMSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFTELQNLSGFKKVLNYTKKIMDFVRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIISHRISKDNSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQHAIDEYKAREDAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKAGKPIKFNALLTTYEVVLKDKAFLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFNSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRIEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVKLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLERKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQGHELLGAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEDNQSEKCTKRKKKEPEPPERVQKRRKADYSAPAVPMIEGASVQVRNWSYGNLSKRDALRFSRSVMKYGNENQIDLIVAEVGGTVGAAPPEAQTELFNALIDGCTEAVELGSLDLKVGISITGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLSYLKPANWSKGCGWNQIDDARLLLGIHYHGFGNWENIRLDEKLGLMRKIAPVELQHHETFLPRAPNLRDRASALLEQELAVLGVEHANSRVARKPSKKEREHMMNISLLRGQEKKKKLGSVNVQMRKDRLQKPHKVEPIIKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDEAGVGPSHVNGSASISFSRNGNPFPRSTERQRVLKNTTTYQMPEPVNNVGKSEAWKRRKRTESDDHFLGQPPPQRTMSNGIRTTDPNSLGILGAGPLDKRFVSEKPHRTQPGGFPSRQGFSSGIK 1765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00055 1765 CDD CD2_tandem 532 588 - -
Gabi4184g00055 1765 SUPERFAMILY Chromo domain-like 513 589 IPR016197 -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 365 390 - -
Gabi4184g00055 1765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 850 1132 IPR027417 -
Gabi4184g00055 1765 SMART ultradead3 622 821 IPR014001 -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 224 254 - -
Gabi4184g00055 1765 FunFam Photoperiod-independent early flowering 1 596 870 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1691 1706 - -
Gabi4184g00055 1765 CDD SF2_C_SNF 932 1067 - -
Gabi4184g00055 1765 SMART DUF4208_2 1529 1634 IPR025260 -
Gabi4184g00055 1765 FunFam protein CHROMATIN REMODELING 5 isoform X2 536 588 - -
Gabi4184g00055 1765 Coils Coil 1086 1106 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 50 416 - -
Gabi4184g00055 1765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 847 IPR027417 -
Gabi4184g00055 1765 Gene3D - 857 1087 IPR027417 -
Gabi4184g00055 1765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 638 810 IPR014001 -
Gabi4184g00055 1765 CDD CD1_tandem 419 499 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1712 1726 - -
Gabi4184g00055 1765 Gene3D - 617 856 IPR038718 -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 126 169 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 59 77 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 196 213 - -
Gabi4184g00055 1765 Gene3D - 536 588 - -
Gabi4184g00055 1765 ProSiteProfiles Chromo and chromo shadow domain profile. 534 598 IPR000953 -
Gabi4184g00055 1765 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 857 1087 - -
Gabi4184g00055 1765 Coils Coil 1140 1160 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1682 1765 - -
Gabi4184g00055 1765 Pfam Chromo (CHRromatin Organisation MOdifier) domain 535 589 IPR023780 -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1638 1669 - -
Gabi4184g00055 1765 Pfam Domain of unknown function (DUF4208) 1541 1633 IPR025260 -
Gabi4184g00055 1765 SUPERFAMILY Chromo domain-like 418 501 IPR016197 -
Gabi4184g00055 1765 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 220 1695 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 82 96 - -
Gabi4184g00055 1765 Pfam Helicase conserved C-terminal domain 943 1056 IPR001650 -
Gabi4184g00055 1765 Gene3D - 1359 1467 - -
Gabi4184g00055 1765 SMART helicmild6 972 1056 IPR001650 -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 271 289 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1217 1245 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 111 125 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 391 416 - -
Gabi4184g00055 1765 ProSiteProfiles Chromo and chromo shadow domain profile. 421 509 IPR000953 -
Gabi4184g00055 1765 SMART chromo_7 532 591 IPR000953 -
Gabi4184g00055 1765 SMART chromo_7 421 502 IPR000953 -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1649 1669 - -
Gabi4184g00055 1765 Pfam SNF2-related domain 645 914 IPR000330 GO:0005524|GO:0140658
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 309 337 - -
Gabi4184g00055 1765 MobiDBLite consensus disorder prediction 1210 1246 - -
Gabi4184g00055 1765 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1097 IPR001650 -
Gabi4184g00055 1765 Gene3D - 407 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00055 Gabi-Chr4184 444704 463414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00055 648 1083 RAD5 or RAD16-like Gene Family AT1G02670 26.139 2.17e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4184g00055 SNF2_N 1.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00055 K11367 - gmx:100792398 3048.46