Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00054 ATGGGAACTCCAACTTTCAGCTCTGTACTCTTTAGCCTCCTCCTCCTCCTCCTTTTGTGTCTCACTTGGCCAACTTCTGTTTCTTCACTTCCTATGTCTCTGAGAAGCCAAGCTTCTATCTTGGTTTCTCTCAAACAAGGTTTTGAAGCTAACACTTCTTGTCTGAGCAACTGGGACATGTCTAACTACATGTCACTTTGCACTTGGGATGGCATTCAGTGTGACCATAAGAACAGTTCTGTGGTGTCACTAGATATATCCAACTTGAACGTTTCTGGGACACTTTCACCTGCTATCACAGGACTCAGGAGCCTAGTCAGTGTTTCACTTGCTGGGAATGGCCTTTCTGGGGAGTTCCCAGCAGATATTCACAAGCTAGCAGGGCTCAGATTCCTCAACATATCTAACAATATGTTCAGTGGAAATATGAGTTGGGAATTCTCCAAGTTGAATGAGCTTCAAGTGCTGGATGCTTATAACAACGTGTTCAATTGCTCCCTCCCTTTTGGTGTCACTGAGCTCCCTAAGCTCAAGTACTTGAATTTTGGTGGGAATTATTTCTATGGGGAAATCCATTCAAGCTATGGAAACATGTTGCAGCTCAACTATTTGTCTCTTGCAGGAAATGATTTGAGAGGTTTCATACCCACTGAGCTTGGGAATCTCATCAATCTGACAAAGCTTTTCTTGGGATATTACAATCAATTTGATGGTGGAATCCCACCTCATTTTGGTAAGCTTATCAATTTAGTTCATCTTGACCTTGCAAACTGTGGCTTGAAAGGTCCAATTCCAGCTGAGTTGGGAAACCTCTACAGACTAGACACTCTCTTCTTGCAAACTAATCAGCTCACTGGTTCAATCCCTCCCCAACTAGGCAATTTGAGTAGCTTGAAATCTCTTGATTTATCTAATAATGAGCTAACAGGAGACATACCAAATGAGTTCTCTAGGCTTCATGAACTTACCCTCTTGAACTTATTCATTAACAGGTTGCATGGTGAAATCCCACCTTTCCTTGCTGAGCTACCTAAGTTGGAAGTGTTGAAGCTTTGGCAGAACAACTTCACAGGAACCATTCCTTCAAAGCTTGGCCAGAATGGTAAATTGACTGAGCTTGACCTGTCAACAAATAAGCTCACTGGATTAGTCCCCAAATTTCTATGCCTTGGCAAGAGGCTGAAGATTTTGATATTGCTCAATAATTTTCTGTTTGGATCTTTGCCTGCTGATCTTGGTCAATGCTACACACTCCAAAGAGTTCGTCTGGGACAGAACTATTTGACAGGATCACTACCAAATGGATTTCTTTATTTGCCTGAGCTATCCCTTCTGGAACTACAGAACAATTATCTTAGTGGTTGGCTTCCACAAGGAACAACTACTACAACACCCTCTAAACTTGGACAGTTGAATCTATCAAACAACCGCTTATCTGGGTCTCTGCCAACCTCTATTGGAAACTTTCCCAACTTGCAAATTCTGCTACTTCGTGGAAATAGAATCTCAGGAGAAATTCCTCCTGATATAGGGAGGTTGAAAAATATTCTCAAGTTGGATATAAGTGTTAACAACATTTCAGGCAGCATTCCTCCTGAGATAGGTAACTGTTTATTGCTCACCTATTTAGATTTGAGCCAAAACCAATTATCAGGTTCAATCCCAGTTCAGGTTTCTCAAATTCACATACTAAACTATCTTAATGTCTCATGGAACCACCTGAACCAAAGTCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTAACTTCAGCAGATTTCTCTCATAATGACTTCTCCGGTTCAATACCTGATATGGGACAATTCTCAGTCTTTAATTCTACATCCTTTGTGGGTAATCCTCAGCTCTGTGGATATGACTTGAAACCATGCAACCATTCTTCATCGGCAATATTGGGTTCTCAGGACAAAGGCAGTGCAAAACCTGGAGTTCCTGGGAAGTATAAGCTTCTTTTTCCATTGGCATTGTTAGGTTGTTCATTGGTGTTTGCAACCTTAGCCATTATCAAGAGCAGAAAGGAAAGGAGGCACTCCAATTCATGGAAGCTCACAGCGTTTCAGAAGTTAGAATATGGAAGTGAAGACATCTTAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGGGGAGGAGCTGGGGTTGTATACCGAGGAACCATGCCAAATGGGGAGCAAGTAGCTGTGAAGAAGCTGTTGGGAATCAATAATGGTTGTTCTCATGATAATGGCCTCTCTGCAGAAATAAGGACACTAGGTAGAATCAGGCATAGGTACATTGTAAGGTTGCTAGCATTTTGTTCCAATAGAGAGACCAATTTACTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGTGAAGTCTTGCATGGGAAAAGGGGGGAGTTTCTCAAGTGGGATACTAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGGCTTTGTTATCTGCACCATGATTGTTCCCCTCTGATAATCCATAGAGACGTCAAGTCAAACAACATATTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAATGCATGTCTTCCATTGCTGGTTCTTATGGCTATATAGCTCCAGAATATGCATACACACTAAAAGTTGATGAGAAAAGTGATGTCTATAGCTTTGGAGTGGTACTGTTAGAACTACTAACAGGGCGAAGGCCAGTGGGTGATTTTGGGGAAGAAGGACTAGACATTGTTCAATGGATGAAGCTACAAACCAATTGGAGTACAGAAAAAGTGGTGAAGATCATTGATGAGAGGCTATGTAACATTCCATTAGATGAAGCAAAGCAAGTATTCTTTGTAGCCATGTTATGTGTTCAGGAACAAAGCGTGGAGCGACCAGCCATGAGGGAAGTGGTTGAAATGCTAGCACAAGCAAAGCAACCAAATGCAGTGAGTGATCTAGGAAAGGAAAGAAAGTAA 2988 0.419 MGTPTFSSVLFSLLLLLLLCLTWPTSVSSLPMSLRSQASILVSLKQGFEANTSCLSNWDMSNYMSLCTWDGIQCDHKNSSVVSLDISNLNVSGTLSPAITGLRSLVSVSLAGNGLSGEFPADIHKLAGLRFLNISNNMFSGNMSWEFSKLNELQVLDAYNNVFNCSLPFGVTELPKLKYLNFGGNYFYGEIHSSYGNMLQLNYLSLAGNDLRGFIPTELGNLINLTKLFLGYYNQFDGGIPPHFGKLINLVHLDLANCGLKGPIPAELGNLYRLDTLFLQTNQLTGSIPPQLGNLSSLKSLDLSNNELTGDIPNEFSRLHELTLLNLFINRLHGEIPPFLAELPKLEVLKLWQNNFTGTIPSKLGQNGKLTELDLSTNKLTGLVPKFLCLGKRLKILILLNNFLFGSLPADLGQCYTLQRVRLGQNYLTGSLPNGFLYLPELSLLELQNNYLSGWLPQGTTTTTPSKLGQLNLSNNRLSGSLPTSIGNFPNLQILLLRGNRISGEIPPDIGRLKNILKLDISVNNISGSIPPEIGNCLLLTYLDLSQNQLSGSIPVQVSQIHILNYLNVSWNHLNQSLPKELGAMKGLTSADFSHNDFSGSIPDMGQFSVFNSTSFVGNPQLCGYDLKPCNHSSSAILGSQDKGSAKPGVPGKYKLLFPLALLGCSLVFATLAIIKSRKERRHSNSWKLTAFQKLEYGSEDILGCIKESNVIGRGGAGVVYRGTMPNGEQVAVKKLLGINNGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGLDIVQWMKLQTNWSTEKVVKIIDERLCNIPLDEAKQVFFVAMLCVQEQSVERPAMREVVEMLAQAKQPNAVSDLGKERK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00054 995 SUPERFAMILY L domain-like 369 630 - -
Gabi4184g00054 995 Gene3D Phosphorylase Kinase; domain 1 675 783 - -
Gabi4184g00054 995 SUPERFAMILY Protein kinase-like (PK-like) 700 978 IPR011009 -
Gabi4184g00054 995 SMART LRR_typ_2 561 585 IPR003591 -
Gabi4184g00054 995 SMART LRR_typ_2 295 319 IPR003591 -
Gabi4184g00054 995 SMART LRR_typ_2 343 367 IPR003591 -
Gabi4184g00054 995 SMART LRR_typ_2 271 294 IPR003591 -
Gabi4184g00054 995 SMART LRR_typ_2 368 389 IPR003591 -
Gabi4184g00054 995 SMART LRR_typ_2 489 513 IPR003591 -
Gabi4184g00054 995 SMART LRR_typ_2 439 463 IPR003591 -
Gabi4184g00054 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Gabi4184g00054 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 36 146 - -
Gabi4184g00054 995 Gene3D Transferase(Phosphotransferase) domain 1 784 993 - -
Gabi4184g00054 995 SMART serkin_6 706 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4184g00054 995 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Gabi4184g00054 995 SUPERFAMILY L domain-like 63 388 - -
Gabi4184g00054 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 347 634 - -
Gabi4184g00054 995 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Gabi4184g00054 995 ProSiteProfiles Protein kinase domain profile. 706 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4184g00054 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 784 995 - -
Gabi4184g00054 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 235 340 - -
Gabi4184g00054 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 980 - -
Gabi4184g00054 995 Gene3D Ribonuclease Inhibitor 33 183 IPR032675 -
Gabi4184g00054 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 675 783 - -
Gabi4184g00054 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 147 234 - -
Gabi4184g00054 995 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Gabi4184g00054 995 Gene3D Ribonuclease Inhibitor 368 634 IPR032675 -
Gabi4184g00054 995 Pfam Protein tyrosine and serine/threonine kinase 708 978 IPR001245 GO:0004672|GO:0006468
Gabi4184g00054 995 Gene3D Ribonuclease Inhibitor 184 290 IPR032675 -
Gabi4184g00054 995 Gene3D Ribonuclease Inhibitor 291 367 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00054 Gabi-Chr4184 437788 442195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00054 25 980 Receptor kinase-like Gene Family AT5G65700 58.229 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4184g00054 PK_Tyr_Ser-Thr 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00054 - - gmx:100816158 1695.63