Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00053 ATGTTAACTGCAATCCTCAGAAGAACTTGTTCCACACTCTCAAGGCGTGCTTTCCCCGCCGCTGCCGCCATTTCCACCTCCGTCGCCGGTGGCGAGCTCCGGCAATTCTCCGTCTTCGGAGCGAGGTCCTTCCACTCGAAACCGGAGACCTTGAATTTCCGCGCCTCTCTGGCTTCTCGTGCGGAGTATGCTGTAGCCGATTTCCCGTACGAAGAAGGGTCCAAAGGGAACAGCGATGAAGGCCTTGAGATCGCAAAGCTCGGGATTTCTGAGGAAATTGTCTCTGCTTTGGCCAAGAAAGGTATCGTCAAGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACGGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTAAGTTTAATGCTAAGCATGGACGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCGAAGCAGGTTGAAAAGGAGTTCTATGAGACAGCGCCTAACTTGGATACGATTTGTGTTTATGGGGGTACACCCATCTCACAGCAAATGAGGCAGCTTGATTATGGTGTTGATATTGCAGTGGGCACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTTCTCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTTGACGAAGCTGATCAGATGCTTCAAGTAGGCTTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCGTCTTGGATAAAACAGATTACACGCAATTACCTAAACAATCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGAAGGAATTTCGCTGTACTCAATTGCATCTGATATGTATGTTAAAGCGGGAATTCTTCCACCTCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCATATAGCATGGCAAAAAGTCTTAAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGATCTTCCCAATAACTCGGAGATATTTGTTCATCGATCAGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCAGTTCTTGTTTATACAGATGATCAATCCAGGGCTGTTAAGATTATTGAGCGTGATGTAGGCTGTAGATTTAAAGAGCTACCAAAGATTGCTGTTGATAGTGGATCTGCGGATGCATTTGGTGGCATGGATGGTGGCCGATTTGGTTCTTTTGGAGGTACAAGGGATCGTCGATATGGCGATACAGGTTCTGGCCGTGGTTCTGGATTTGGCCGTTCTGGGGGCTACAGTAATCCTGGATCTGGCCGCTCTGGCTATGGAAATTCTGGTGAAAGGTCTGGTGGACCAAATTATAATCGTTTTGGTCAATCAGGAGGGGGATTTTCTGGTAATTCATCTGGTGAAATGAGTAGATATGGTGGACCAAGCTCTGGTCGTTATGGTGGCTCTGGTTCAGGTCAATCAGGAAGCAGATCATCCAATGCATTTAAATTTAGTCGTCCTGGGGGATTTGGTGGTTCCGATGATTCTGGTGGTTTTGGGGATTTCGGCTCAGGTCAATCAAGTGCATTTGGTGATTCTCGTGGCAGTGATAAGAACAATAGAAGAAAACCATTTTAG 1836 0.4564 MLTAILRRTCSTLSRRAFPAAAAISTSVAGGELRQFSVFGARSFHSKPETLNFRASLASRAEYAVADFPYEEGSKGNSDEGLEIAKLGISEEIVSALAKKGIVKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIKFNAKHGRGRDPLALVLAPTRELAKQVEKEFYETAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQITRNYLNNPLTIDLVGDSDQKLAEGISLYSIASDMYVKAGILPPLITEHAKGGKCIVFTQTKRDADRLSYSMAKSLKCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAVLVYTDDQSRAVKIIERDVGCRFKELPKIAVDSGSADAFGGMDGGRFGSFGGTRDRRYGDTGSGRGSGFGRSGGYSNPGSGRSGYGNSGERSGGPNYNRFGQSGGGFSGNSSGEMSRYGGPSSGRYGGSGSGQSGSRSSNAFKFSRPGGFGGSDDSGGFGDFGSGQSSAFGDSRGSDKNNRRKPF 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00053 611 SMART helicmild6 341 421 IPR001650 -
Gabi4184g00053 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 441 IPR027417 -
Gabi4184g00053 611 MobiDBLite consensus disorder prediction 476 611 - -
Gabi4184g00053 611 MobiDBLite consensus disorder prediction 499 544 - -
Gabi4184g00053 611 MobiDBLite consensus disorder prediction 552 569 - -
Gabi4184g00053 611 Pfam Helicase conserved C-terminal domain 317 421 IPR001650 -
Gabi4184g00053 611 SMART ultradead3 101 304 IPR014001 -
Gabi4184g00053 611 FunFam ATP-dependent RNA helicase RhlE 74 290 - -
Gabi4184g00053 611 CDD SF2_C_DEAD 313 430 - -
Gabi4184g00053 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 460 IPR001650 -
Gabi4184g00053 611 CDD DEADc 93 288 - -
Gabi4184g00053 611 Gene3D - 307 463 IPR027417 -
Gabi4184g00053 611 FunFam Nucleolar RNA helicase II 309 466 - -
Gabi4184g00053 611 MobiDBLite consensus disorder prediction 586 600 - -
Gabi4184g00053 611 Gene3D - 83 291 IPR027417 -
Gabi4184g00053 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 287 IPR014001 -
Gabi4184g00053 611 Pfam DEAD/DEAH box helicase 106 275 IPR011545 GO:0003676|GO:0005524
Gabi4184g00053 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Gabi4184g00053 611 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 76 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00053 Gabi-Chr4184 419994 425214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00053 87 453 Eukaryotic Initiation Factors Gene Family AT3G19760 33.962 2.10e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00053 - - gmx:100786041 889.797